View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_9 (Length: 458)
Name: NF10174_low_9
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 37038427 - 37038861
Alignment:
| Q |
18 |
acccacgttatccagcaaacaaggtgatgatttgggacgatcatcaatcacggtgtatcggagagttgtcgtttcgttcggaggtgaaaggtgttcgtct |
117 |
Q |
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| T |
37038427 |
acccacgttatccagcaaacaaggtgatgatttgggacgatcatcaatcacggtgtatcggagagttgtcgtttcgttcggaggtgaaaggtgttcgtct |
37038526 |
T |
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| Q |
118 |
tcgtcgcgatagaatcgtcgttgttttggcgcataagatttttgtttacaattttgctgatcttaaagttcttcatcaaattgaaactattgctaatcct |
217 |
Q |
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| T |
37038527 |
tcgtcgcgatagaatcgtcgttgttttggcgcataagatttttgtttacaattttgctgatcttaaagttcttcatcaaattgaaactattgctaatcct |
37038626 |
T |
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| Q |
218 |
acggggctatgtgaagtttcacatgtttcgggaactatggttttggcttgtcctgggttgcagaagggtcaaattagggttgagcattatgcctctaaga |
317 |
Q |
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| T |
37038627 |
acggggctatgtgaagtttcacatgtttcgggaactatggttttggcttgtcctgggttgcagaagggtcaaattagggttgagcattatgcttctaaga |
37038726 |
T |
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| Q |
318 |
gaactaagttcataatggcacatgattcgagaattgcgtgttttgctataacccaagacggacgtttgcttgctactgcaagctccaaagggactcttgt |
417 |
Q |
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| T |
37038727 |
gaactaagttcataatggcacatgattcgagaattgcgtgttttgctataacccaagacggacgtttgcttgctactgcaagctccaaagggactcttgt |
37038826 |
T |
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| Q |
418 |
tagggttttcaataccttggatggttctctgcttc |
452 |
Q |
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| T |
37038827 |
tagggtttttaataccttggatggttctttgcttc |
37038861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 305
Target Start/End: Original strand, 44206822 - 44206975
Alignment:
| Q |
152 |
aagatttttgtttacaattttgctgatcttaaagttcttcatcaaattgaaactattgctaatcctacggggctatgtgaagtttcacatgtttcgggaa |
251 |
Q |
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||||| |||||||| ||||| |||||||| || | | ||||| ||||||||||||||||| |||| ||| ||||| ||||||||||||||| | | |
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| T |
44206822 |
aagatatttgtttataatttcgctgatctgaagctgttgcatcagattgaaactattgctaaccctaagggtttatgttcagtttcacatgtttctgaat |
44206921 |
T |
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| Q |
252 |
ctatggttttggcttgtcctgggttgcagaagggtcaaattagggttgagcatt |
305 |
Q |
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| T |
44206922 |
ctcttgttcttgcttgtcctggtttgcataagggtcagattcgtgtggagcatt |
44206975 |
T |
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