View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_90 (Length: 220)
Name: NF10174_low_90
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_90 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 16996022 - 16996187
Alignment:
| Q |
1 |
taattttatttttgtattaaatttgttgtattctataaatcgtcttatttctttgtctgtgtttccattttaacctaatttttattttctgatgattcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16996022 |
taattttatttttgtattaaatttgttgtattctaaaaaacgtcttatttctttgtgtgtgtttccattttaacctaatttttattttctgatgattcaa |
16996121 |
T |
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| Q |
101 |
gattattgagtttggttttatgttcaccttttttctaaagcatcgatcttaatatggaagatgttt |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16996122 |
gattattgagtttggttttatgttcaccttttttctaaagcatcgatcttaatatggaagatgttt |
16996187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 55057464 - 55057298
Alignment:
| Q |
1 |
taattttatttttgtattaaatttgttgtattctataaatcgtcttatttctttgtctgtgtttccattttaacctaatttttattttctgatgattcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55057464 |
taattttatttttgtattaaatttgttgtattctataaatcgtcttatttcgttgtctgtgtttccattttaacctaatttttattttctgatgattcaa |
55057365 |
T |
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| Q |
101 |
gattattgagtttggttttatgttcac-cttttttctaaagcatcgatcttaatatggaagatgttt |
166 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55057364 |
gattattgagtttggttttatgttcacatttttttctaaagcatcgatcttaatatggaagatgttt |
55057298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 4069325 - 4069159
Alignment:
| Q |
1 |
taattttatttttgtattaaatttgttgtattctataaatcgtcttatttctttgtctgtgtttccattttaacctaatttttattttctgatgattcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4069325 |
taattttatttttgtattaaatttgttgtattctataaatcgtcttatttcgttgtctgtgtttccgttttaacctaatttttattttctgatgattcaa |
4069226 |
T |
|
| Q |
101 |
gattattgagtttggttttatgttcac-cttttttctaaagcatcgatcttaatatggaagatgttt |
166 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4069225 |
gattattgagtttggttttatgttcacatttttttctaaagcatcgatcttaatatggaagatgttt |
4069159 |
T |
|
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