View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10174_low_91 (Length: 220)
Name: NF10174_low_91
Description: NF10174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10174_low_91 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34049280 - 34049497
Alignment:
| Q |
1 |
ctatgaatgcattctttaaaccttttactataataatttttatgaattatcttatttgtaataatatcatgtaaaatttaagattcnnnnnnnnnnnnaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
34049280 |
ctatgaatgcattctttaaaccttttactataataatttttatgaattatcttatttgtaataatatcatgtaaaattta-gattctttttcgtttttaa |
34049378 |
T |
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| Q |
101 |
tggaaaagaagaagatatccaatcaaattaattcattttggtgttttgaaaaattggccagatatacaaattccagttaacacagctctcagaccatgtg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34049379 |
tggaaaagaagaagatatccaatcaaataaattcattttggtgttttgaaaa-ttggccagatatacaaattccagttaacacagctctcagaccatgtg |
34049477 |
T |
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| Q |
201 |
ccagaatctaatgtgagaaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34049478 |
ccagaatctaatgtgagaaa |
34049497 |
T |
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