View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10175_high_3 (Length: 242)

Name: NF10175_high_3
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10175_high_3
NF10175_high_3
[»] chr6 (4 HSPs)
chr6 (49-104)||(674140-674195)
chr6 (55-98)||(31974908-31974951)
chr6 (50-104)||(26478533-26478587)
chr6 (47-95)||(3846435-3846483)
[»] chr3 (11 HSPs)
chr3 (52-98)||(26331309-26331355)
chr3 (49-104)||(18093868-18093923)
chr3 (51-94)||(26331223-26331266)
chr3 (49-94)||(16867623-16867668)
chr3 (49-90)||(26601972-26602013)
chr3 (50-98)||(27786547-27786595)
chr3 (49-97)||(55121176-55121224)
chr3 (50-97)||(49733624-49733671)
chr3 (60-92)||(16867719-16867751)
chr3 (59-95)||(27786460-27786496)
chr3 (49-93)||(55121264-55121308)
[»] chr2 (16 HSPs)
chr2 (49-98)||(30429070-30429119)
chr2 (49-104)||(34138785-34138840)
chr2 (49-98)||(472413-472462)
chr2 (49-98)||(9733556-9733605)
chr2 (49-98)||(27279488-27279537)
chr2 (46-98)||(23143573-23143625)
chr2 (46-98)||(23555363-23555415)
chr2 (60-98)||(9733480-9733518)
chr2 (60-98)||(41517365-41517403)
chr2 (69-98)||(11565002-11565031)
chr2 (49-94)||(31719186-31719231)
chr2 (49-98)||(41517454-41517503)
chr2 (49-97)||(472502-472550)
chr2 (66-110)||(29168607-29168651)
chr2 (46-86)||(38871457-38871497)
chr2 (46-86)||(40363232-40363272)
[»] chr5 (12 HSPs)
chr5 (50-98)||(14751216-14751264)
chr5 (49-104)||(34445351-34445406)
chr5 (49-107)||(28351034-28351092)
chr5 (49-98)||(5865931-5865980)
chr5 (52-92)||(43221654-43221694)
chr5 (59-98)||(40773072-40773111)
chr5 (46-104)||(14144322-14144380)
chr5 (33-98)||(28499783-28499851)
chr5 (50-98)||(6266229-6266278)
chr5 (49-94)||(34445266-34445311)
chr5 (46-98)||(25694202-25694254)
chr5 (50-98)||(40772970-40773018)
[»] chr1 (21 HSPs)
chr1 (49-97)||(24419623-24419671)
chr1 (50-104)||(4604929-4604983)
chr1 (47-97)||(47154737-47154787)
chr1 (51-100)||(14231045-14231094)
chr1 (49-98)||(38636292-38636341)
chr1 (50-98)||(38636230-38636278)
chr1 (49-92)||(11016679-11016722)
chr1 (60-95)||(41944774-41944809)
chr1 (37-98)||(4540622-4540686)
chr1 (52-98)||(24419534-24419580)
chr1 (51-97)||(42074225-42074271)
chr1 (49-95)||(51171260-51171306)
chr1 (49-98)||(35489198-35489247)
chr1 (49-94)||(49166698-49166743)
chr1 (50-98)||(457663-457711)
chr1 (49-97)||(1609966-1610014)
chr1 (49-93)||(5700124-5700168)
chr1 (66-98)||(8174202-8174234)
chr1 (50-98)||(30412598-30412646)
chr1 (66-98)||(31032443-31032475)
chr1 (49-97)||(34890188-34890236)
[»] chr7 (9 HSPs)
chr7 (50-97)||(2399702-2399749)
chr7 (60-98)||(34670354-34670392)
chr7 (49-98)||(18701025-18701076)
chr7 (46-96)||(3967792-3967842)
chr7 (47-92)||(28785627-28785672)
chr7 (49-98)||(29229762-29229810)
chr7 (49-97)||(45444720-45444769)
chr7 (66-98)||(25778306-25778338)
chr7 (50-98)||(35274503-35274551)
[»] chr4 (11 HSPs)
chr4 (49-104)||(39993132-39993187)
chr4 (60-98)||(10065067-10065105)
chr4 (49-98)||(23673446-23673495)
chr4 (49-98)||(20291872-20291921)
chr4 (49-98)||(38562216-38562265)
chr4 (49-93)||(7277506-7277550)
chr4 (64-104)||(12828364-12828404)
chr4 (49-93)||(20291788-20291832)
chr4 (50-94)||(27990367-27990411)
chr4 (50-98)||(32125429-32125477)
chr4 (67-95)||(38562130-38562158)
[»] chr8 (7 HSPs)
chr8 (49-94)||(27988084-27988129)
chr8 (49-94)||(28045386-28045431)
chr8 (66-104)||(1784196-1784234)
chr8 (47-93)||(30358669-30358714)
chr8 (49-98)||(30557018-30557067)
chr8 (60-104)||(14113208-14113252)
chr8 (46-98)||(28882751-28882803)


Alignment Details
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 674140 - 674195
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    ||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||    
T  674140 ttattcaatgaatctaaaaaattgttttttgcttataaatgtgaccggagaaagta 674195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 31974951 - 31974908
Alignment:
Q  55 aataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||    
T  31974951 aataaacctaaaaaattgttttttgcttataaatgtgactggag 31974908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 26478533 - 26478587
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    ||||||||||||||| ||||| || |||||||||||||||| |||| || |||||    
T  26478533 tattcaataaacctaaaaagtagtgttttgcttataaatgtaaccgaaggaagta 26478587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 3846483 - 3846435
Alignment:
Q  47 atttattcaataaacctagaaagttgttttttgcttataaatgtgaccg 95  Q
    ||||||||||| ||| || ||| || |||||||||||||||||||||||    
T  3846483 atttattcaatgaacttaaaaaattattttttgcttataaatgtgaccg 3846435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 26331309 - 26331355
Alignment:
Q  52 ttcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||    
T  26331309 ttcaatgaacctaaaaagttgttttttgcttataaatgtgaccggag 26331355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 18093868 - 18093923
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||    
T  18093868 ttattcaataaacctaaaaacttgtttattgcttataaatgtgaccgaagagagta 18093923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 26331266 - 26331223
Alignment:
Q  51 attcaataaacctagaaagttgttttttgcttataaatgtgacc 94  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  26331266 attcaatgaacctagaaaattgttttttgcttataaatgtgacc 26331223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 16867668 - 16867623
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgacc 94  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||    
T  16867668 ttattcaatgtacctaaaaagttgttttttgcttataaatgtgacc 16867623  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 26602013 - 26601972
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgt 90  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  26602013 ttattcaatgaacctaaaaagttgttttttgcttataaatgt 26601972  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 27786547 - 27786595
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| |||||| |||||||| |||||||||||||||||| |||||    
T  27786547 tattcaatgaacctaaaaagttgtgttttgcttataaatgtgatcggag 27786595  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 55121224 - 55121176
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    ||||||||| |||||| ||| |||||||||| |||||||||||||||||    
T  55121224 ttattcaatgaacctaaaaaattgttttttgtttataaatgtgaccgga 55121176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 49733671 - 49733624
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    ||||||||||| ||| |||||| | |||||||||||||||||||||||    
T  49733671 tattcaataaatctaaaaagttatgttttgcttataaatgtgaccgga 49733624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 16867719 - 16867751
Alignment:
Q  60 acctagaaagttgttttttgcttataaatgtga 92  Q
    ||||| |||||||||||||||||||||||||||    
T  16867719 acctaaaaagttgttttttgcttataaatgtga 16867751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 27786496 - 27786460
Alignment:
Q  59 aacctagaaagttgttttttgcttataaatgtgaccg 95  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  27786496 aacctaaaaagtagttttttgcttataaatgtgaccg 27786460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 55121264 - 55121308
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgac 93  Q
    ||||| |||||| ||| |||||| |||||||||||||||||||||    
T  55121264 ttatttaataaatctaaaaagttattttttgcttataaatgtgac 55121308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 30429119 - 30429070
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||||||||    
T  30429119 ttattgaatgaacctaaaaagttgttttttgcttataaatgtgaccggag 30429070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 34138785 - 34138840
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    |||||||||||||||| ||| |||||||||| |||||||||||| ||||| |||||    
T  34138785 ttattcaataaacctaaaaaattgttttttgtttataaatgtgatcggaggaagta 34138840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 472462 - 472413
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||||||||| |||||| | ||||| ||||||||||||||||||    
T  472462 ttattcaataaacctaaaaagttatattttgtttataaatgtgaccggag 472413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 9733556 - 9733605
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||| |||||| ||| |||||||||| ||||||||||||||||||    
T  9733556 ttattcaatgaacctaaaaaattgttttttgtttataaatgtgaccggag 9733605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 27279537 - 27279488
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||| |||||| ||| || ||||||||||||||||||||||||||    
T  27279537 ttattcaatgaacctaaaaaattattttttgcttataaatgtgaccggag 27279488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 23143573 - 23143625
Alignment:
Q  46 catttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| |||||||||| ||||||| |||||||||||||  ||||||||||    
T  23143573 catttattgaataaacctaaaaagttgatttttgcttataatagtgaccggag 23143625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 23555363 - 23555415
Alignment:
Q  46 catttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| |||||||||| ||||||| |||||||||||||  ||||||||||    
T  23555363 catttattgaataaacctaaaaagttgatttttgcttataatagtgaccggag 23555415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 9733518 - 9733480
Alignment:
Q  60 acctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  9733518 acctaaaaaattgttttttgcttataaatgtgaccggag 9733480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 41517403 - 41517365
Alignment:
Q  60 acctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  41517403 acctaaaaagttggtttttgcttataaatgtgaccggag 41517365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 98
Target Start/End: Complemental strand, 11565031 - 11565002
Alignment:
Q  69 gttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||||||||||||||||||||||||    
T  11565031 gttgttttttgcttataaatgtgaccggag 11565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 31719231 - 31719186
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgacc 94  Q
    ||||||||| || ||| ||||||||||||| |||||||||||||||    
T  31719231 ttattcaatgaatctaaaaagttgttttttacttataaatgtgacc 31719186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 41517454 - 41517503
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||  || || |||||| ||||||||||||||||||||||||||    
T  41517454 ttattcaatgtacttaaaaagttattttttgcttataaatgtgaccggag 41517503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 472502 - 472550
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    ||||||||| |||||| ||| |||| |||||||||||| ||||||||||    
T  472502 ttattcaattaacctaaaaaattgtgttttgcttataattgtgaccgga 472550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 29168607 - 29168651
Alignment:
Q  66 aaagttgttttttgcttataaatgtgaccggagaaagtaccagat 110  Q
    |||||| ||||||||||||||||||||||||| ||| ||| ||||    
T  29168607 aaagttattttttgcttataaatgtgaccggataaattacaagat 29168651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 38871497 - 38871457
Alignment:
Q  46 catttattcaataaacctagaaagttgttttttgcttataa 86  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  38871497 catttattcaataaatttagaaaattgttttttgcttataa 38871457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 40363272 - 40363232
Alignment:
Q  46 catttattcaataaacctagaaagttgttttttgcttataa 86  Q
    |||||||||||| |||||| ||||| |||||||||||||||    
T  40363272 catttattcaatgaacctaaaaagtagttttttgcttataa 40363232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 14751216 - 14751264
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  14751216 tattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggag 14751264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 34445351 - 34445406
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    |||||||||||| ||| ||||||||  ||||||||||||||||||| |||||||||    
T  34445351 ttattcaataaatctaaaaagttgtgatttgcttataaatgtgacctgagaaagta 34445406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 28351034 - 28351092
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagtacca 107  Q
    ||||||||| || ||| ||||||||||||||||||||||| ||||||||| || |||||    
T  28351034 ttattcaatgaatctaaaaagttgttttttgcttataaatatgaccggaggaaatacca 28351092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 5865931 - 5865980
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||| |||||| |||  ||||||||||||||||||||||||||||    
T  5865931 ttattcaatgaacctaaaaatgtgttttttgcttataaatgtgaccggag 5865980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 43221654 - 43221694
Alignment:
Q  52 ttcaataaacctagaaagttgttttttgcttataaatgtga 92  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  43221654 ttcaataaacctaaaaagttattttttgcttataaatgtga 43221694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 40773072 - 40773111
Alignment:
Q  59 aacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  40773072 aacctaaaaagtggttttttgcttataaatgtgaccggag 40773111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 14144380 - 14144322
Alignment:
Q  46 catttattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    ||||||||||||||||||| ||||| | ||| |||||||||  ||||||||||| ||||    
T  14144380 catttattcaataaacctaaaaagtagatttatgcttataatagtgaccggagagagta 14144322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 28499851 - 28499783
Alignment:
Q  33 ttatgaccgaatacatt---tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||| |||||||   |||||||| || ||| ||| || ||||||||||||||||||||||||||    
T  28499851 ttatgaccggatacattagttattcaatgaatctaaaaaattattttttgcttataaatgtgaccggag 28499783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 6266229 - 6266278
Alignment:
Q  50 tattcaataaacctagaaagt-tgttttttgcttataaatgtgaccggag 98  Q
    ||||||||||||||| ||| | | ||||||||||||||||||||||||||    
T  6266229 tattcaataaacctaaaaattgttttttttgcttataaatgtgaccggag 6266278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 34445311 - 34445266
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgacc 94  Q
    |||||| || |||||| |||||||||||||||||||||| ||||||    
T  34445311 ttattccatgaacctaaaaagttgttttttgcttataaaagtgacc 34445266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 25694202 - 25694254
Alignment:
Q  46 catttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||| | ||| |||||||||||||| |||||||||||||  ||||||||||    
T  25694202 catttaatgaatgaacctagaaagttgatttttgcttataatagtgaccggag 25694254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 40773018 - 40772970
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||| ||| |||||| ||| ||||||||| |||||||||||||||||||    
T  40773018 tattaaatgaacctaaaaaattgttttttacttataaatgtgaccggag 40772970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 24419623 - 24419671
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  24419623 ttattcaatgtacctaaaaagttgttttttgcttataaatgtgaccgga 24419671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 4604929 - 4604983
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||| || |||||    
T  4604929 tattcaataaacctaaaaagtgattttttgcttataaatgtgaccgaaggaagta 4604983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 47154737 - 47154787
Alignment:
Q  47 atttattcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    ||||||| ||| |||||| ||||||||||||||||||| ||||||||||||    
T  47154737 atttattaaatgaacctaaaaagttgttttttgcttattaatgtgaccgga 47154787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 14231094 - 14231045
Alignment:
Q  51 attcaataaacctagaaagttgttttttgcttataaatgtgaccggagaa 100  Q
    ||||||| ||| || |||||| ||||||||||||||||||||||||||||    
T  14231094 attcaatgaacgtaaaaagttattttttgcttataaatgtgaccggagaa 14231045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 38636292 - 38636341
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||| || ||| ||||||||||||||||| |||||||||||||||    
T  38636292 ttattcaatcaatctaaaaagttgttttttgcttttaaatgtgaccggag 38636341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 38636278 - 38636230
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| || ||| |||||||||||||||||||||||||||| ||||    
T  38636278 tattcaatgaatctaaaaagttgttttttgcttataaatgtgacaggag 38636230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 11016679 - 11016722
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtga 92  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||    
T  11016679 ttattcaataaacctaaaaagttgatttttgtttataaatgtga 11016722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 41944809 - 41944774
Alignment:
Q  60 acctagaaagttgttttttgcttataaatgtgaccg 95  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41944809 acctaaaaagttgttttttgcttataaatgtgaccg 41944774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 4540686 - 4540622
Alignment:
Q  37 gaccgaatacatt---tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||||||   |||||||| |||||| |||||   |||||||||||||||||||||||||    
T  4540686 gaccgaatacattatatattcaatgaacctataaagtacatttttgcttataaatgtgaccggag 4540622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 24419580 - 24419534
Alignment:
Q  52 ttcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||| || ||| |||||| ||||||||||||||||||||||||||    
T  24419580 ttcaatgaatctaaaaagttcttttttgcttataaatgtgaccggag 24419534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 42074225 - 42074271
Alignment:
Q  51 attcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    ||||||| |||||| ||| | ||||||||||||||||||||||||||    
T  42074225 attcaatgaacctaaaaaatagttttttgcttataaatgtgaccgga 42074271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 51171306 - 51171260
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccg 95  Q
    |||| ||||| ||||| ||||||||||||||||||||||| ||||||    
T  51171306 ttatacaatatacctaaaaagttgttttttgcttataaatatgaccg 51171260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 35489247 - 35489198
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||  | ||| |||||||||||||| ||||||||||||||||||    
T  35489247 ttattcaatgtatctaaaaagttgttttttgattataaatgtgaccggag 35489198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 49166698 - 49166743
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgacc 94  Q
    |||||||||  | ||| |||||||||||||||||||||||||||||    
T  49166698 ttattcaatgtaactaaaaagttgttttttgcttataaatgtgacc 49166743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 457663 - 457711
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| |||||| |||||   |||||||||||||||||||||||||    
T  457663 tattcaatgaacctaaaaagtgcatttttgcttataaatgtgaccggag 457711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 1610014 - 1609966
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    |||||||||  | ||| ||||||||||||||||||||||||||| ||||    
T  1610014 ttattcaatgtatctaaaaagttgttttttgcttataaatgtgatcgga 1609966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 5700124 - 5700168
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgac 93  Q
    |||||||||  || || ||||||||||||||||||||||||||||    
T  5700124 ttattcaatgtacttaaaaagttgttttttgcttataaatgtgac 5700168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 8174202 - 8174234
Alignment:
Q  66 aaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| ||||||||||||||||||||||||    
T  8174202 aaagttgtgttttgcttataaatgtgaccggag 8174234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 30412646 - 30412598
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| |||||| |||||   |||||||||||||||||||||||||    
T  30412646 tattcaatgaacctaaaaagtgcatttttgcttataaatgtgaccggag 30412598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 31032475 - 31032443
Alignment:
Q  66 aaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||||||||||||| |||||||||||||    
T  31032475 aaagttgttttttgcttattaatgtgaccggag 31032443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 34890236 - 34890188
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    |||||||||  | ||| |||||||||||||||||||| |||||||||||    
T  34890236 ttattcaatgtatctaaaaagttgttttttgcttatatatgtgaccgga 34890188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 2399749 - 2399702
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccgga 97  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||    
T  2399749 tattcaatgtacttagaaagttgttttttgcttataaatgtgaccgga 2399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 34670392 - 34670354
Alignment:
Q  60 acctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  34670392 acctaaaaagttgttttttgcttataaatgtgaccggag 34670354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 18701076 - 18701025
Alignment:
Q  49 ttattcaataaacctagaaagttgtt--ttttgcttataaatgtgaccggag 98  Q
    |||||||||||||||| |||||||||  |||||||| |||||||||||||||    
T  18701076 ttattcaataaacctaaaaagttgttttttttgcttgtaaatgtgaccggag 18701025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 3967792 - 3967842
Alignment:
Q  46 catttattcaataaacctagaaagttgttttttgcttataaatgtgaccgg 96  Q
    |||||||||||| |||||| ||||| |||||||||||||||  ||||||||    
T  3967792 catttattcaatgaacctaaaaagtagttttttgcttataatagtgaccgg 3967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 28785672 - 28785627
Alignment:
Q  47 atttattcaataaacctagaaagttgttttttgcttataaatgtga 92  Q
    ||||||| |||||||||| | | |||||||||||||||||||||||    
T  28785672 atttatttaataaacctaaacaattgttttttgcttataaatgtga 28785627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 29229762 - 29229810
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||| |||||| ||||||| ||||||||||||||| |||||||||    
T  29229762 ttattcaatgaacctaaaaagttg-tttttgcttataaatatgaccggag 29229810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 45444769 - 45444720
Alignment:
Q  49 ttattcaataaacctagaaagttgtt-ttttgcttataaatgtgaccgga 97  Q
    ||||||||||||| || ||||||||| |||||||||||||||||| ||||    
T  45444769 ttattcaataaacttaaaaagttgtttttttgcttataaatgtgatcgga 45444720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 25778338 - 25778306
Alignment:
Q  66 aaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||||||| ||||||||||||||||||    
T  25778338 aaagttgttttttgtttataaatgtgaccggag 25778306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 35274503 - 35274551
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| |||||| |||||   |||||||||||||||||||||||||    
T  35274503 tattcaatgaacctaaaaagtgcatttttgcttataaatgtgaccggag 35274551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 39993132 - 39993187
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    ||||||||| || ||| |||||| |||||| |||||||||||||||||||||||||    
T  39993132 ttattcaatgaatctaaaaagttattttttacttataaatgtgaccggagaaagta 39993187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 10065105 - 10065067
Alignment:
Q  60 acctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  10065105 acctaaaaagttgttttttgcttataaatgtgaccggag 10065067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 23673446 - 23673495
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||| ||||    
T  23673446 ttattcaatatacctaaaaagttattttttgcttataaatgtgactggag 23673495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 20291872 - 20291921
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||||| ||| |||||| |||||||||||||||| ||| |||||    
T  20291872 ttattcaataaatctaaaaagttattttttgcttataaatatgatcggag 20291921  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 38562216 - 38562265
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||||  | ||| ||| |||||||||||||||||||||||||||||    
T  38562216 ttattcaatgtatctaaaaaattgttttttgcttataaatgtgaccggag 38562265  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 7277506 - 7277550
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgac 93  Q
    ||||||||||||| || ||||| |||||| |||||||||||||||    
T  7277506 ttattcaataaacttaaaaagtcgtttttcgcttataaatgtgac 7277550  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 12828404 - 12828364
Alignment:
Q  64 agaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    |||||||||||||||||||||| |||||| ||||| |||||    
T  12828404 agaaagttgttttttgcttatatatgtgatcggaggaagta 12828364  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 20291832 - 20291788
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgac 93  Q
    ||||| |||| || || ||||||||||||||||||||||||||||    
T  20291832 ttatttaatatacttaaaaagttgttttttgcttataaatgtgac 20291788  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 27990367 - 27990411
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgacc 94  Q
    |||||||| |||||| ||||| || ||||||||||||||||||||    
T  27990367 tattcaatgaacctaaaaagtagtgttttgcttataaatgtgacc 27990411  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 32125429 - 32125477
Alignment:
Q  50 tattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| |||||| ||||| | ||||||||||||||| |||||||||    
T  32125429 tattcaatgaacctaaaaagtagatttttgcttataaatatgaccggag 32125477  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 38562158 - 38562130
Alignment:
Q  67 aagttgttttttgcttataaatgtgaccg 95  Q
    |||||||||||||||||||||||||||||    
T  38562158 aagttgttttttgcttataaatgtgaccg 38562130  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 27988129 - 27988084
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgacc 94  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||    
T  27988129 ttattcaatgaacttaaaaagttgttttttgcttataaatgtgacc 27988084  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 28045431 - 28045386
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgacc 94  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||    
T  28045431 ttattcaatgaacttaaaaagttgttttttgcttataaatgtgacc 28045386  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 1784196 - 1784234
Alignment:
Q  66 aaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  1784196 aaagttgttttttgcttataaatgtgaccagaggaagta 1784234  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 30358669 - 30358714
Alignment:
Q  47 atttattcaataaacctagaaagttgttttttgcttataaatgtgac 93  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  30358669 atttattcaatatacctaaaaagttgtttttt-cttataaatgtgac 30358714  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 30557018 - 30557067
Alignment:
Q  49 ttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    ||||||||| |||||| |||||||||||| | ||||||||||||| ||||    
T  30557018 ttattcaatgaacctaaaaagttgtttttcgtttataaatgtgactggag 30557067  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 14113252 - 14113208
Alignment:
Q  60 acctagaaagttgttttttgcttataaatgtgaccggagaaagta 104  Q
    ||||| |||||| ||||||||||| ||||||||||||||| ||||    
T  14113252 acctaaaaagttattttttgcttagaaatgtgaccggagagagta 14113208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 28882751 - 28882803
Alignment:
Q  46 catttattcaataaacctagaaagttgttttttgcttataaatgtgaccggag 98  Q
    |||||||| |||||||||| || |||| |||||||||||||  ||||||||||    
T  28882751 catttattgaataaacctaaaaggttgatttttgcttataatagtgaccggag 28882803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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