View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10175_low_1 (Length: 422)

Name: NF10175_low_1
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10175_low_1
NF10175_low_1
[»] chr8 (2 HSPs)
chr8 (194-400)||(13223709-13223918)
chr8 (47-156)||(13223573-13223682)
[»] chr6 (4 HSPs)
chr6 (313-402)||(21689529-21689618)
chr6 (318-365)||(30701935-30701982)
chr6 (315-409)||(29031476-29031569)
chr6 (323-392)||(4311978-4312047)
[»] scaffold0062 (1 HSPs)
scaffold0062 (318-396)||(1047-1125)
[»] chr5 (2 HSPs)
chr5 (313-402)||(22797746-22797835)
chr5 (321-392)||(26013218-26013289)
[»] chr4 (1 HSPs)
chr4 (319-396)||(22317356-22317433)
[»] chr2 (1 HSPs)
chr2 (315-391)||(23958923-23959000)
[»] scaffold0211 (1 HSPs)
scaffold0211 (319-396)||(25105-25182)
[»] chr7 (3 HSPs)
chr7 (318-402)||(17914990-17915075)
chr7 (317-391)||(7561493-7561568)
chr7 (315-391)||(1782500-1782577)
[»] scaffold0084 (1 HSPs)
scaffold0084 (319-398)||(18133-18212)
[»] chr3 (2 HSPs)
chr3 (318-392)||(26820587-26820661)
chr3 (318-350)||(17389321-17389353)
[»] scaffold0711 (1 HSPs)
scaffold0711 (319-351)||(2299-2331)
[»] chr1 (1 HSPs)
chr1 (319-407)||(12439916-12440004)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 194 - 400
Target Start/End: Original strand, 13223709 - 13223918
Alignment:
Q  194 catctatatttttcttaaatgcattcccacatgatttgattcttcaacttcacaaattagcaaaaataaatcttaaaattattagagaaaattcttgagg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13223709 catctatatttttcttaaatgcattcccacatgatttgattcttcaacttcacaaattagcaaaaataaatcttaaaattattagagaaaattcttgagg 13223808  T
Q  294 aagttgtg---nnnnnnnnnnntcagttgtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatata 390  Q
    ||||||||              ||||||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||||| || ||||    
T  13223809 aagttgtgaaagaaaaaaaaaatcagttgtgattataataaaatctattggaagtgcaaggagattggaataatcctagattgtaagagaaatcagtata 13223908  T
Q  391 aaattgatgt 400  Q
    ||||||||||    
T  13223909 aaattgatgt 13223918  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 13223573 - 13223682
Alignment:
Q  47 tggctctgccaccaccatctattcatccatatatactccgatttgatgatcacgtttgcacgtactaatggaacattttacacataatttcaaacattga 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13223573 tggctctgccaccaccatctattcatccatatatactccgatttgatcataacgtttgcacgtactaatggaacattttacacataatttcaaacattga 13223672  T
Q  147 ttgagatatt 156  Q
    ||||||||||    
T  13223673 ttgagatatt 13223682  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 21689529 - 21689618
Alignment:
Q  313 tcagttgtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaaattgatgtgt 402  Q
    |||||||||||||||||||||||  ||||||||| |||| || || | ||||||| ||||||||||| ||||| |||||||||| |||||    
T  21689529 tcagttgtgattatagtgaaatcccttggaagtggaaggggactggactactccttgattgtaagaggaaccagtataaaattgttgtgt 21689618  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 30701935 - 30701982
Alignment:
Q  318 tgtgattatagtgaaatctattggaagtgcaaggagattgaaatactc 365  Q
    ||||||||||||||||| | |||||||||||||| |||||||||||||    
T  30701935 tgtgattatagtgaaatatgttggaagtgcaaggggattgaaatactc 30701982  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 409
Target Start/End: Complemental strand, 29031569 - 29031476
Alignment:
Q  315 agttgtgattatagtg-aaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaaattgatgtgtctctgct 409  Q
    |||||||||||||||| |||||| ||||||||| |||| || |||| |||||||| |||| | ||| ||||| |||  ||||||||||| ||||||    
T  29031569 agttgtgattatagtgaaaatctcttggaagtggaaggggactgaactactcctaaattgcaggagcaaccattat--aattgatgtgtgtctgct 29031476  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 4312047 - 4311978
Alignment:
Q  323 ttatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaa 392  Q
    |||||||||||||  |||||||||||| |||| |  | ||||||||| ||||| ||| ||||||||||||    
T  4312047 ttatagtgaaatcccttggaagtgcaatgagactagattactcctagtttgtaggaggaaccaatataaa 4311978  T

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Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 1125 - 1047
Alignment:
Q  318 tgtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaaattg 396  Q
    |||||| |||||||||||| ||||||||| ||||||| || | ||||||| ||||||| ||| ||||||||||||||||    
T  1125 tgtgatcatagtgaaatctcttggaagtgtaaggagactggactactcctggattgtaggaggaaccaatataaaattg 1047  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 22797746 - 22797835
Alignment:
Q  313 tcagttgtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaaattgatgtgt 402  Q
    |||||||||| ||||||||||||  ||| |||||||||| || || | ||||||||||||| | |||||||||  ||||||||| |||||    
T  22797746 tcagttgtgactatagtgaaatcccttgtaagtgcaaggggactggactactcctagattgcaggagaaaccaggataaaattgttgtgt 22797835  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 392
Target Start/End: Complemental strand, 26013289 - 26013218
Alignment:
Q  321 gattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaa 392  Q
    |||||||||||||||  ||| |||||||||||||||| | ||||||| | ||||| ||| ||||||||||||    
T  26013289 gattatagtgaaatcccttgaaagtgcaaggagattggactactcctggtttgtaggaggaaccaatataaa 26013218  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Original strand, 22317356 - 22317433
Alignment:
Q  319 gtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaaattg 396  Q
    |||||||||||||||||  |||||||||||| |||| || | ||||||| ||||||| ||| ||||| ||||||||||    
T  22317356 gtgattatagtgaaatcccttggaagtgcaatgagactggactactcctggattgtaggaggaaccagtataaaattg 22317433  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 23959000 - 23958923
Alignment:
Q  315 agttgtgattatagtgaaa-tctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataa 391  Q
    ||||||||||||| ||||| ||| |||||||||||||| || || | ||||||| ||||||||||| |||||||||||    
T  23959000 agttgtgattataatgaaaatctcttggaagtgcaaggggactggactactcctggattgtaagaggaaccaatataa 23958923  T

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Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 25182 - 25105
Alignment:
Q  319 gtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaaattg 396  Q
    ||||||||||||||| |  |||||||||||||| ||||| | |||||||  |||||  ||| ||||||||||||||||    
T  25182 gtgattatagtgaaaccccttggaagtgcaaggggattggactactcctttattgtgggaggaaccaatataaaattg 25105  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 17915075 - 17914990
Alignment:
Q  318 tgtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaaga-gaaaccaatataaaattgatgtgt 402  Q
    ||||||||||||||||||| ||| |||||||||| || || | ||||||| ||| ||| || ||||||| |||||||||| |||||    
T  17915075 tgtgattatagtgaaatctcttgaaagtgcaaggggaatggactactcctggatagtaggaggaaaccagtataaaattgttgtgt 17914990  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 7561493 - 7561568
Alignment:
Q  317 ttgtgattatagtgaaa-tctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataa 391  Q
    ||||||||||||| ||| ||| |||||||||||||| | ||||| ||||||  ||||||| ||| |||||||||||    
T  7561493 ttgtgattatagtcaaaatctcttggaagtgcaaggggtttgaactactccaggattgtaggagtaaccaatataa 7561568  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 1782577 - 1782500
Alignment:
Q  315 agttgtgattatagtgaa-atctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataa 391  Q
    |||||||||||||||||| |||| |||||||||||| | || |||| |||||||| |||||  ||| ||||| |||||    
T  1782577 agttgtgattatagtgaatatctcttggaagtgcaatgggactgaattactcctaaattgtcggaggaaccagtataa 1782500  T

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Target: scaffold0084 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 18133 - 18212
Alignment:
Q  319 gtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaaattgat 398  Q
    ||||||||||||||| || |||||||| |||||||| |  | |||||||   ||||| ||| ||||||||||||||||||    
T  18133 gtgattatagtgaaacctcttggaagtacaaggagactcgactactcctttgttgtaggaggaaccaatataaaattgat 18212  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 26820661 - 26820587
Alignment:
Q  318 tgtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaa 392  Q
    ||||||||||||||||| | |||||||||||| | || || | |||||||||||| || ||| |||| |||||||    
T  26820661 tgtgattatagtgaaatttcttggaagtgcaaagggaatggactactcctagattataggaggaaccgatataaa 26820587  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 17389321 - 17389353
Alignment:
Q  318 tgtgattatagtgaaatctattggaagtgcaag 350  Q
    |||||||||||||||||| ||||||||||||||    
T  17389321 tgtgattatagtgaaatccattggaagtgcaag 17389353  T

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Target: scaffold0711 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 2299 - 2331
Alignment:
Q  319 gtgattatagtgaaatctattggaagtgcaagg 351  Q
    |||||||||||||||||| ||||||||||||||    
T  2299 gtgattatagtgaaatcttttggaagtgcaagg 2331  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 12439916 - 12440004
Alignment:
Q  319 gtgattatagtgaaatctattggaagtgcaaggagattgaaatactcctagattgtaagagaaaccaatataaaattgatgtgtctctg 407  Q
    |||||||||||||||||  |||||||||||||  ||||| | |||||||  |||||  ||| ||| | |||||||||| | ||||||||    
T  12439916 gtgattatagtgaaatcccttggaagtgcaagaggattggagtactcctgaattgtgggaggaactagtataaaattgttttgtctctg 12440004  T

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