View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10175_low_10 (Length: 238)
Name: NF10175_low_10
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10175_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12430844 - 12431067
Alignment:
| Q |
1 |
cagaatgattttctcatgcaaattaggaat--gagacactatgtttaactggatgcaacgtcgaccagtttttacacactattcttgatgaatttaatta |
98 |
Q |
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| T |
12430844 |
cagattgattttttcatgcaaattaggaatatgagacactatgtttaactggatgcaacgtcgaccagtttttacacactattcttgatgaaattaatta |
12430943 |
T |
|
| Q |
99 |
atataggtatcatatttgtactgtagtgttcatagattttctgtgttactaaatggttattgacatctgttgctttaaactgcatttgattagtattttg |
198 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
12430944 |
atatagttatcatatttgtactgtagtgttcataaattttctgtgttactaaatggttattgacttctattgctttaaactgcatttgattagtattttg |
12431043 |
T |
|
| Q |
199 |
tcattatgttatcttctatatttt |
222 |
Q |
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||||||||||||||||||| |||| |
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| T |
12431044 |
tcattatgttatcttctatgtttt |
12431067 |
T |
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