View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10175_low_12 (Length: 230)

Name: NF10175_low_12
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10175_low_12
NF10175_low_12
[»] chr2 (1 HSPs)
chr2 (7-212)||(10852276-10852481)
[»] chr1 (2 HSPs)
chr1 (69-161)||(50488237-50488329)
chr1 (72-157)||(3901545-3901630)
[»] chr8 (2 HSPs)
chr8 (123-161)||(40560992-40561030)
chr8 (123-161)||(41410935-41410973)
[»] chr3 (1 HSPs)
chr3 (123-161)||(54674656-54674694)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 10852481 - 10852276
Alignment:
Q  7 gagaagaaaatggggaattgtgagttgaagatgagatttgagtttatggaaagataaatgtttgaatttggggattaattatgagtccagggatgaattt 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  10852481 gagaagaaaatggggaattgtgggttgaagatgagatttgagtttatggaaagataaatgtctgaatttggggattaattatgagtctagggatgaattt 10852382  T
Q  107 gaggatgaacttttgatttgtggatgaatttatgggtttagggaagatgaagctatttcaattctcaaacccagaaaattgaagaagaggaaggggaagc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10852381 gaggatgaacttttgatttgtggatgaatttatgggtttagggaagatgaagctatttcaattctcaaacccagaaaattgaagaagaggaaggggaagc 10852282  T
Q  207 agaaga 212  Q
    ||||||    
T  10852281 agaaga 10852276  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 50488329 - 50488237
Alignment:
Q  69 tgaatttggggattaattatgagtccagggatgaatttgaggatgaacttttgatttgtggatgaatttatgggtttagggaagatgaagcta 161  Q
    |||||||||||||| |||||| ||  |||||||| ||| ||| || |   ||||||||||||||||||||| |||||| ||||||||||||||    
T  50488329 tgaatttggggattcattatgggtttagggatgattttcagggtggataattgatttgtggatgaatttattggtttatggaagatgaagcta 50488237  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 3901545 - 3901630
Alignment:
Q  72 atttggggattaattatgagtccagggatgaatttgaggatgaacttttgatttgtggatgaatttatgggtttagggaagatgaa 157  Q
    ||||||||||| |||||| ||  |||||||| ||| ||| || |   ||| ||||||||||||||||| |||||| ||||||||||    
T  3901545 atttggggattcattatgggtttagggatgattttcagggtggataattggtttgtggatgaatttattggtttatggaagatgaa 3901630  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 40560992 - 40561030
Alignment:
Q  123 tttgtggatgaatttatgggtttagggaagatgaagcta 161  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  40560992 tttgtggatgaatttattggtttatggaagatgaagcta 40561030  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 41410973 - 41410935
Alignment:
Q  123 tttgtggatgaatttatgggtttagggaagatgaagcta 161  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  41410973 tttgtggatgaatttattggtttatggaagatgaagcta 41410935  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 54674694 - 54674656
Alignment:
Q  123 tttgtggatgaatttatgggtttagggaagatgaagcta 161  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  54674694 tttgtggatgaatttattggtttatggaagatgaagcta 54674656  T

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