View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10175_low_13 (Length: 217)

Name: NF10175_low_13
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10175_low_13
NF10175_low_13
[»] chr4 (11 HSPs)
chr4 (9-217)||(2365787-2365995)
chr4 (9-165)||(19733190-19733347)
chr4 (24-167)||(19756063-19756207)
chr4 (24-167)||(19783599-19783743)
chr4 (24-167)||(23641791-23641935)
chr4 (24-167)||(23647449-23647593)
chr4 (24-167)||(47419600-47419744)
chr4 (24-167)||(55299417-55299561)
chr4 (24-167)||(23872677-23872821)
chr4 (24-147)||(29553021-29553145)
chr4 (24-167)||(1827740-1827884)
[»] chr8 (9 HSPs)
chr8 (9-165)||(26774449-26774606)
chr8 (24-167)||(7925182-7925326)
chr8 (24-165)||(29721113-29721255)
chr8 (106-167)||(16375303-16375364)
chr8 (24-157)||(9923397-9923531)
chr8 (26-144)||(18187943-18188062)
chr8 (30-168)||(36493183-36493322)
chr8 (24-167)||(8300599-8300743)
chr8 (24-167)||(41664568-41664712)
[»] chr2 (3 HSPs)
chr2 (28-165)||(20004745-20004883)
chr2 (9-165)||(32191837-32191994)
chr2 (24-167)||(13551378-13551522)
[»] chr3 (9 HSPs)
chr3 (9-165)||(40512926-40513083)
chr3 (34-165)||(5342435-5342565)
chr3 (24-167)||(2365074-2365218)
chr3 (24-167)||(34332015-34332159)
chr3 (24-167)||(19919429-19919573)
chr3 (24-166)||(6175678-6175821)
chr3 (15-165)||(17270944-17271095)
chr3 (9-165)||(962365-962522)
chr3 (32-132)||(31675735-31675836)
[»] chr6 (5 HSPs)
chr6 (24-167)||(26206129-26206273)
chr6 (36-138)||(19350752-19350855)
chr6 (9-165)||(13938499-13938656)
chr6 (24-167)||(2554401-2554545)
chr6 (24-167)||(11060062-11060206)
[»] scaffold0034 (1 HSPs)
scaffold0034 (24-167)||(105043-105187)
[»] chr7 (6 HSPs)
chr7 (24-167)||(4937328-4937472)
chr7 (24-157)||(17721431-17721565)
chr7 (13-167)||(37942054-37942209)
chr7 (24-167)||(29968770-29968914)
chr7 (24-76)||(2820012-2820065)
chr7 (106-167)||(13440937-13440998)
[»] chr5 (10 HSPs)
chr5 (24-167)||(30731514-30731658)
chr5 (24-167)||(42514516-42514660)
chr5 (32-167)||(22094449-22094585)
chr5 (24-167)||(28534876-28535020)
chr5 (30-168)||(4297508-4297647)
chr5 (24-124)||(19838360-19838462)
chr5 (24-163)||(23239179-23239319)
chr5 (98-157)||(26262655-26262714)
chr5 (24-122)||(35983036-35983135)
chr5 (24-92)||(26261593-26261662)
[»] chr1 (11 HSPs)
chr1 (24-167)||(5497882-5498026)
chr1 (24-167)||(6051399-6051543)
chr1 (32-165)||(13867042-13867176)
chr1 (24-167)||(32352512-32352656)
chr1 (24-167)||(48072626-48072770)
chr1 (9-148)||(7395939-7396079)
chr1 (107-165)||(49264167-49264225)
chr1 (52-166)||(51052706-51052820)
chr1 (34-102)||(5809387-5809456)
chr1 (13-165)||(47622279-47622432)
chr1 (24-167)||(35541830-35541974)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 2365787 - 2365995
Alignment:
Q  9 ttatttaaaagagactcaatagaagagattatacctgacagagtttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||    
T  2365787 ttatttaaaagagactcaatagaagagattatacctgacagagtttgaaaaaggagagaacatagacaggtaaggaagtcaagacagacttaaggataac 2365886  T
Q  109 caatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaatacttggtatattaatacataatttgcaccaaattgtaaaacaa 208  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2365887 caatcgaccaccaaaagacagaaaacgactcttccaaccagacaatctagatttaatacttggtatattaatacataatttgcaccaaattgtaaaacaa 2365986  T
Q  209 accacgagc 217  Q
    |||||||||    
T  2365987 accacgagc 2365995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 19733347 - 19733190
Alignment:
Q  9 ttatttaaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataa 107  Q
    |||||||| | ||| ||||| |||||||||||||||||| ||| |||||| ||| | ||| |||||||||| | || |||||||| ||| || || |  |    
T  19733347 ttatttaataaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagacaggaagggcagtcaggacagatttgagaagga 19733248  T
Q  108 ccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
     |||||||||||||||||| || || ||||| | | ||||||||||||||| ||||||    
T  19733247 tcaatcgaccaccaaaagaaaggaaccgactatgctaaccaaacaatctagctttaat 19733190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 19756063 - 19756207
Alignment:
Q  24 tcaatagaagagattatacctgacagagttt-gaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| ||||||||||||||||||||||||| ||| ||| | ||  ||||||||||||  | ||||||||  ||||| || | || ||| |||||||| |    
T  19756063 tcaatggaagagattatacctgacagagttttgaaaaaggaaagtgcatagacaggtagcgcagtcaggacggactttagtagaatcaaacgaccaccga 19756162  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  19756163 aagaaaggaaccgactttgccaaccagacaatctagatttaatac 19756207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 19783743 - 19783599
Alignment:
Q  24 tcaatagaagagattatacctgacagagttt-gaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| ||||||||||||||||||||||||| ||| ||| | ||  ||||||||||||  | ||||||||  ||||| || | || ||| |||||||| |    
T  19783743 tcaatggaagagattatacctgacagagttttgaaaaaggaaagtgcatagacaggtagcgcagtcaggacggactttagtagaatcaaacgaccaccga 19783644  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  19783643 aagaaaggaaccgactttgccaaccagacaatctagatttaatac 19783599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 23641935 - 23641791
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | |||||||| |||||| || | || ||| |||||||| |    
T  23641935 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccga 23641836  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  23641835 aagataggaaccgactttgccaaccagacaatctagatttaatac 23641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 23647593 - 23647449
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | |||||||| |||||| || | || |||  ||||||| |    
T  23647593 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaatgaccaccga 23647494  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  23647493 aagataggaaccgactttgccaaccagacaatctagatttaatac 23647449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 47419600 - 47419744
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| ||||  |||||||||| |  | ||||||||  ||||| || | || ||| |||||||| |    
T  47419600 tcaatggaagagattatacctgtcggagctttgaagaaggagagtgcatagacagggagagcagtcaggaccgactttagtagaatcaaacgaccaccga 47419699  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  47419700 aagataggaaccgactttgccaaccagacaatctagatttaatac 47419744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 55299417 - 55299561
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    |||||||| |||||||||||||   ||| |||||||||| | ||  |||||||||| |  || |||| || ||| || || | |||||| ||||||||||    
T  55299417 tcaatagaggagattatacctgttggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaa 55299516  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| ||||| ||||| ||||||||  ||||||||||||||||||    
T  55299517 aagagagaaaccgactattccaacccgacaatctagatttaatac 55299561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 23872821 - 23872677
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    |||||||| |||||||||||||   ||| |||||||||| | ||  |||||||||| |  || |||| || ||| || || | |||||| ||||||||||    
T  23872821 tcaatagaggagattatacctgctggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaa 23872722  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| ||||| ||||| ||||||||  ||| ||||||||||||||    
T  23872721 aagagagaaaccgactattccaacccgacagtctagatttaatac 23872677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 29553145 - 29553021
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||||||| | ||| |||||||||| |  ||||||| || ||  || || | |||||| ||||||||||    
T  29553145 tcaatggaagagattatacctgacggagctttgaagaaggaaagagcatagacaggcagagaagtcaagacagctttgagaagaaccaaacgaccaccaa 29553046  T
Q  123 aagacagaaaacgactcttccaacc 147  Q
    |||| || |||| ||| ||||||||    
T  29553045 aagaaaggaaacaactattccaacc 29553021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 1827884 - 1827740
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||| ||| | ||  |||||||||| |  | ||||||||  ||||| || | || ||| || ||||| |    
T  1827884 tcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggaagagcagtcaggacggactttagaagaatcaaacggccaccga 1827785  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  1827784 aagagaggaaccgactttgccaaccagacaatctagatttaatac 1827740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 26774606 - 26774449
Alignment:
Q  9 ttatttaaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataa 107  Q
    |||||||||||| | ||||||||||||||||||| |||| ||| |||||||||| ||||| |||||| |||||| |||||||||| |||||||| || ||    
T  26774606 ttatttaaaagatattcaatagaagagattatacatgacggagctttgaagaaggagagagcatagataggtaacgaagtcaggacagacttaatgagaa 26774507  T
Q  108 ccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
     ||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  26774506 tcaaacgaccaacaaaagacagaaaacgactcttccaaccagataatctagatttaat 26774449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 7925182 - 7925326
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | |||||||| |||||| || | || ||| |||||||| |    
T  7925182 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccga 7925281  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || |||||   ||||||| ||||||||||||||||||    
T  7925282 aagataggaaccgacttgnccaaccagacaatctagatttaatac 7925326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 29721255 - 29721113
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||| ||| | ||| |||||||||| || || | ||||| |||||| || | || |||||| || || |    
T  29721255 tcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagacaggcaaagaggacaggacagacttgagcaaaatcaatcggcccccga 29721156  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
    | || || |||||||||| ||| || |||||||||||||||||    
T  29721155 atgagaggaaacgactctgccaccctaacaatctagatttaat 29721113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 16375364 - 16375303
Alignment:
Q  106 aaccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||||| |||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||    
T  16375364 aaccaagcgaccaccaaaagagagaaaccgactattccaacctaacagtctagatttaatac 16375303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 9923397 - 9923531
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||| ||| | ||   |||||||||||  | ||||| ||  |||||||| | |||||| ||||||||||    
T  9923397 tcaatggaagagattatacctgacggagctttgaaaaaggaaagtgtatagacaggtagagcagtcaagacggacttaagaagaaccaaacgaccaccaa 9923496  T
Q  123 aagacagaaaacgactcttccaaccaaacaatcta 157  Q
    |||| || || ||||| | ||||||| ||||||||    
T  9923497 aagaaaggaatcgactttgccaaccagacaatcta 9923531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 18187943 - 18188062
Alignment:
Q  26 aatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaa 124  Q
    ||||||||||||| |||||||| ||| |||||||| | | ||| |||||||||  |   ||||||||||| ||||||| || | |||  |||||||||||    
T  18187943 aatagaagagattgtacctgacggagctttgaagatggaaagagcatagacagacagaaaagtcaggataaacttaagaatgatcaagtgaccaccaaaa 18188042  T
Q  125 gacagaaaacgactcttcca 144  Q
    || |||||  ||||||||||    
T  18188043 gaaagaaagtgactcttcca 18188062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 36493183 - 36493322
Alignment:
Q  30 gaagagattatacctgacagagt-ttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaagaca 128  Q
    ||||| |||||||||||| |||  ||||||||| | ||| ||||||||||||  || |||| || |||||| |||| ||| || || |||||||| || |    
T  36493183 gaagaaattatacctgacggagccttgaagaaggaaagagcatagacaggtagagaggtcaagacagactttaggagaactaaccggccaccaaacgata 36493282  T
Q  129 gaaaacgactcttccaaccaaacaatctagatttaatact 168  Q
     ||| ||||| ||  ||||| ||||||| |||||||||||    
T  36493283 aaaaccgactattgaaaccagacaatctcgatttaatact 36493322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 8300599 - 8300743
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||| ||| | ||  ||||||||||||  | ||||||||  ||||| || | || ||| || ||||| |    
T  8300599 tcaatggaagagattatacctgccggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttagaagaatcaaacggccaccga 8300698  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    | || ||||| ||||| | |||||||  |||||||||||||||||    
T  8300699 aggaaagaaaccgactttgccaaccagccaatctagatttaatac 8300743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 41664712 - 41664568
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| ||| |||||||||||||| ||| |||||| ||| | ||  | |||||||||   | ||||||||  ||||| || | || ||| |||||||| |    
T  41664712 tcaatggaatagattatacctgacggagctttgaaaaaggaaagtgcgtagacaggtggagcagtcaggacggactttagtagaatcaaacgaccaccga 41664613  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  41664612 aagataggaaccgactttgccaaccagacaatctagatttaatac 41664568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 20004745 - 20004883
Alignment:
Q  28 tagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaaga 126  Q
    ||||||||||||||||||| |||| |||||||||| |||||  |||||||||||| |||||||||| |  |||||||| || ||| ||||||||||||||    
T  20004745 tagaagagattatacctgatagagctttgaagaaggagagagtatagacaggtaacgaagtcaggacaatcttaaggaaaatcaaacgaccaccaaaaga 20004844  T
Q  127 cagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
    || |||  || ||||||||||| ||||||||||||||||    
T  20004845 caaaaagtgaatcttccaaccagacaatctagatttaat 20004883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 32191837 - 32191994
Alignment:
Q  9 ttatttaaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataa 107  Q
    |||||||||||||| |||| ||||||| ||||||||||  ||| |||||||||  ||||| ||| | ||||||| |||||||  | | | ||||||| ||    
T  32191837 ttatttaaaagagattcaacagaagaggttatacctgaaggagctttgaagaaagagagagcatggccaggtaacgaagtcaatacaaatttaaggagaa 32191936  T
Q  108 ccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
     ||| | |||||||||||| ||||| | ||||||||||||| ||||||||||||||||    
T  32191937 tcaaacaaccaccaaaagaaagaaagcaactcttccaaccagacaatctagatttaat 32191994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 13551378 - 13551522
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    |||||||| ||||||||||||||  ||| |||||||||| | ||  |||||||||| || || ||||||| ||| || || | |||||| ||||||||||    
T  13551378 tcaatagaggagattatacctgatggagctttgaagaaggaaagtgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgaccaccaa 13551477  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| ||||| ||||| ||||||||  ||| ||||||||||||||    
T  13551478 aagatagaaaccgactattccaacctgacagtctagatttaatac 13551522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 40513083 - 40512926
Alignment:
Q  9 ttatttaaaagagactcaatagaagagattatacctgacagagt-ttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataa 107  Q
    ||||| |||||||| |||||   |||||||||||||||| |||  ||||||||| | ||| ||||||||||||| | |||||||| ||||||||| |  |    
T  40513083 ttattaaaaagagattcaatgatagagattatacctgacggagccttgaagaaggaaagagcatagacaggtaatgcagtcaggacagacttaagaagga 40512984  T
Q  108 ccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
    |||| ||||| |||||||| ||||||||||| | ||| || |||| ||||||||||||    
T  40512983 ccaaccgacctccaaaagagagaaaacgactttgccaccccaacagtctagatttaat 40512926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 5342565 - 5342435
Alignment:
Q  34 agattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaagacagaaa 132  Q
    ||||||||||||||  || |||||||||| ||| ||||  || |||| | ||||| |||||||||||||||| || ||| |||| |||||| ||||||||    
T  5342565 agattatacctgacgaagctttgaagaaggagaaaaca--gataggtgacgaagttaggatagacttaaggagaatcaaacgactaccaaacgacagaaa 5342468  T
Q  133 acgactcttccaaccaaacaatctagatttaat 165  Q
    |||  ||||||||||  ||||||||||||||||    
T  5342467 acggttcttccaaccggacaatctagatttaat 5342435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 2365074 - 2365218
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | |||||||| |||||| || | || ||| |||||||| |    
T  2365074 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccga 2365173  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  2365174 aagataggaaccgactttgccaaccagacaatctagatttaatac 2365218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 34332159 - 34332015
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| ||| || ||| | ||  ||||||||||||  | |||||||| |||||| || | || ||| |||||||| |    
T  34332159 tcaatggaagagattatacctgacggagctttaaaaaaggaaagtgcatagacaggtagagcagtcaggacagactttagtagaatcaaacgaccaccga 34332060  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  34332059 aagaaaggaaccgactttgccaaccagacaatctagatttaatac 34332015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 19919573 - 19919429
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | ||| ||||   |||| || | || ||| |||||||| |    
T  19919573 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagttaggacgaactttagtagaatcaaacgaccaccga 19919474  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| ||||| ||||| | ||||||| ||||||||||||||||||    
T  19919473 aagatagaaaccgactttgccaaccagacaatctagatttaatac 19919429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 6175821 - 6175678
Alignment:
Q  24 tcaatagaagagattatacctgacagagttt-gaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    |||||||| |||||||||||||   |||||| ||||||| | ||  |||||||||| |  || |||| || ||| || || | |||||| ||||||||||    
T  6175821 tcaatagaggagattatacctgttggagttttgaagaaggaaagtgcatagacaggcagagatgtcaagacagatttgagtagaaccaagcgaccaccaa 6175722  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaata 166  Q
    |||| ||||| ||||| ||||||||  ||| |||||||||||||    
T  6175721 aagagagaaaccgactattccaacccgacagtctagatttaata 6175678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 17271095 - 17270944
Alignment:
Q  15 aaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatc 113  Q
    |||| ||| ||||| ||| |||||||||||||||||  |||||| ||| | ||| | |||||| | |  || ||||||| |||||| || | || ||| |    
T  17271095 aaaatagattcaatggaacagattatacctgacagaactttgaaaaagaaaagagcgtagacatgaagagaggtcaggacagacttcagaaaaatcaaac 17270996  T
Q  114 gaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
    |||| |||||||| ||||||||||| |||||||| |||||| |||| |||||    
T  17270995 gacccccaaaagagagaaaacgacttttccaaccgaacaatttagaattaat 17270944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 962522 - 962365
Alignment:
Q  9 ttatttaaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataa 107  Q
    |||||||| | ||| ||||| |||||||||||||||||| ||| |||||| ||| | ||| |||||||||| |  | |||||||| ||| || || |  |    
T  962522 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagacaggaagtgcagtcaggacagatttgagaagga 962423  T
Q  108 ccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
     ||| || ||||||||||| || || ||||| | ||||||| ||||||||| ||||||    
T  962422 tcaaccggccaccaaaagaaaggaaccgactatgccaaccagacaatctagctttaat 962365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 31675735 - 31675836
Alignment:
Q  32 agagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaagacaga 130  Q
    |||||||||||||||| ||| |||||||||| | ||  |||||||||| || || ||||||| |||||| || | |||||| ||||| |||||||| |||    
T  31675735 agagattatacctgacggagctttgaagaaggaaagggcatagacaggcaatgaggtcaggacagacttgagtagaaccaaccgacccccaaaagagaga 31675834  T
Q  131 aa 132  Q
    ||    
T  31675835 aa 31675836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 26206129 - 26206273
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    |||||||| ||||||||||||||  ||| |||||||||| | ||  |||||||||| || || ||||||| ||| || || | |||||| ||||||||||    
T  26206129 tcaatagaggagattatacctgatggagctttgaagaaggaaagtgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgaccaccaa 26206228  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| ||||| ||||| ||||||||  ||| ||||||||||||||    
T  26206229 aagatagaaaccgactattccaacccgacagtctagatttaatac 26206273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 19350752 - 19350855
Alignment:
Q  36 attatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaagacagaaaac 134  Q
    |||||||||||| ||| |||||||||| | || ||||||||||| |  ||| |||| | ||||||||| | |||||| ||||| || ||||| |||||||    
T  19350752 attatacctgacggagctttgaagaaggaaagtacatagacaggaagcgaactcagtacagacttaagaagaaccaaacgacccccgaaagatagaaaac 19350851  T
Q  135 gact 138  Q
    ||||    
T  19350852 gact 19350855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 13938499 - 13938656
Alignment:
Q  9 ttatttaaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataa 107  Q
    |||||||| | ||| ||||| |||||||||||||||||| ||| |||||| ||| | ||| |||||| ||| |  | |||||||| ||| || || |  |    
T  13938499 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagataggaagtgcagtcaggacagatttgagaagga 13938598  T
Q  108 ccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
     |||||| ||||||||||| || || ||||| | || |||| ||||||||| ||||||    
T  13938599 tcaatcggccaccaaaagaaaggaaccgactatgccgaccagacaatctagctttaat 13938656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 2554401 - 2554545
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||| ||| ||| |||||| ||| | ||  ||||||||||||  | ||||||||   |||| || | || ||| |||||||| |    
T  2554401 tcaatggaagagattatacccgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacgaactttagtagaatcaaacgaccaccga 2554500  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| |  |||||| ||||||||||||||||||    
T  2554501 aagaaaggaaccgactttgtcaaccagacaatctagatttaatac 2554545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 11060206 - 11060062
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||  ||  |||||||||| | ||  |||||||||| ||  | ||||||| |||||| |  | |||||  || |||||||    
T  11060206 tcaatggaagagattatacctgatggaactttgaagaaggaaagcgcatagacaggcaaaaaggtcaggacagactttaacaaaaccagacggccaccaa 11060107  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| | ||||||||| ||||||||| |||| |||| ||| ||||    
T  11060106 aagataaaaaacgactgttccaaccagacaacctagcttttatac 11060062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 105187 - 105043
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | |||||||| |||||| || | || ||| |||||||| |    
T  105187 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccga 105088  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  105087 aagataggaaccgactttgccaaccagacaatctagatttaatac 105043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 4937472 - 4937328
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | |||||||| |||||| || | || ||| |||||||| |    
T  4937472 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccga 4937373  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  4937372 aagataggaaccgactttgccaaccagacaatctagatttaatac 4937328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 17721431 - 17721565
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||| ||| | ||  ||||||||||||  | ||||||||   ||||||| | |||||| ||||||||||    
T  17721431 tcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacgaacttaagaagaaccaaacgaccaccaa 17721530  T
Q  123 aagacagaaaacgactcttccaaccaaacaatcta 157  Q
    |||| || || ||||| | ||||||| ||||||||    
T  17721531 aagaaaggaaccgactttgccaaccagacaatcta 17721565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 37942209 - 37942054
Alignment:
Q  13 ttaaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaa 111  Q
    |||||||||| |||||| ||||||| ||||| ||| | | |||||||||| | |  |||||||||||||| ||||  |||  | |||| |||| ||||||    
T  37942209 ttaaaagagattcaatataagagataatacccgacggggctttgaagaaggaaatgacatagacaggtaaagaagatagggaaaactttaggagaaccaa 37942110  T
Q  112 tcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
      |||||| ||| |||| ||| | ||||||||||||  ||||||||| ||||||||    
T  37942109 gtgaccactaaaggacaaaaatctactcttccaacccgacaatctagttttaatac 37942054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 29968770 - 29968914
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||| ||| | ||| ||||||||||||  | ||||||||  ||||| || | || ||| || ||||| |    
T  29968770 tcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagacaggtagagcagtcaggacggactttagaagaatcaaacggccaccga 29968869  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    | || || || ||||| | |||||||  |||||||||||||||||    
T  29968870 aggaaaggaaccgactttgccaaccagccaatctagatttaatac 29968914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 2820065 - 2820012
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagaca 76  Q
    |||||||||||||||||||||||| | | |||||||||| | ||||||||||||    
T  2820065 tcaatagaagagattatacctgacggggctttgaagaaggaaagaacatagaca 2820012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 13440937 - 13440998
Alignment:
Q  106 aaccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||||| ||||||||| |||| ||||| ||||| ||||||||  ||| ||||||||||||||    
T  13440937 aaccaagcgaccaccacaagagagaaaccgactattccaacccgacagtctagatttaatac 13440998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 30731658 - 30731514
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | ||||||||  ||||| || | || ||| |||||||| |    
T  30731658 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacggactttagtagaatcaaacgaccaccga 30731559  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| ||||||||| ||||||||||||||||||    
T  30731558 aagataggaaccgacttttccaaccagacaatctagatttaatac 30731514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 42514516 - 42514660
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | |||||||| |||||| || | || ||| |||||||| |    
T  42514516 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccga 42514615  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  42514616 aagataggaaccgactttgccaaccagacaatctagatttaatac 42514660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 22094585 - 22094449
Alignment:
Q  32 agagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaagacaga 130  Q
    |||||||||||||||| ||| |||||||||| | ||| |||||||||| || ||||||| || ||  || || | ||||||  | ||||||||||| ||     
T  22094585 agagattatacctgacggagctttgaagaaggaaagagcatagacaggcaaagaagtcaagacagctttgagaagaaccaaatggccaccaaaagagagg 22094486  T
Q  131 aaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||||||| ||||||||  ||| ||||| ||||||||    
T  22094485 aaacgactattccaacccgacagtctagctttaatac 22094449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 28535020 - 28534876
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||| ||| | ||  ||||||||||||  | ||||||||  |||||||| | || ||| ||||||||||    
T  28535020 tcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggacttaagaagaatcaaacgaccaccaa 28534921  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||  ||||||||  ||||||||    
T  28534920 aagaaaggaaccgactttgccaacctgacaatctatttttaatac 28534876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 4297647 - 4297508
Alignment:
Q  30 gaagagattatacctgacagagt-ttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaagaca 128  Q
    ||||| |||||||||||| |||| ||||||||| | ||| ||||||||||||  || |||| ||||||||| |||| ||| || || |||||||| || |    
T  4297647 gaagaaattatacctgacggagtcttgaagaaggaaagagcatagacaggtagagaggtcaagatagactttaggagaactaaccggccaccaaacgata 4297548  T
Q  129 gaaaacgactcttccaaccaaacaatctagatttaatact 168  Q
     ||| ||||| ||  || || ||||||| |||||||||||    
T  4297547 aaaaccgactattgaaatcagacaatctcgatttaatact 4297508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 19838360 - 19838462
Alignment:
Q  24 tcaatagaagagattatacctgacagag--tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccacca 121  Q
    |||| |||||||||| |||||| |||||  |||||||||| | |||||||||||||| || |||||||||| |||||| || | || ||| ||||||| |    
T  19838360 tcaacagaagagattgtacctgtcagagcttttgaagaaggaaagaacatagacaggcaaagaagtcaggacagacttgagaagaatcaaacgaccacaa 19838459  T
Q  122 aaa 124  Q
    |||    
T  19838460 aaa 19838462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 23239179 - 23239319
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||| ||| | ||  ||||||||||||  | ||||||||  ||||| || | || | | |||||||| |    
T  23239179 tcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttagaagaatcgaacgaccaccga 23239278  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagattta 163  Q
    |||| || || ||||| | ||||||| ||||||||||||||    
T  23239279 aagaaaggaaccgactttgccaaccagacaatctagattta 23239319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 26262714 - 26262655
Alignment:
Q  98 ttaaggataaccaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatcta 157  Q
    ||||||| || ||| ||| |||||||||| |||||||||||||||||| || ||||||||    
T  26262714 ttaaggagaatcaagcgatcaccaaaagaaagaaaacgactcttccaaacagacaatcta 26262655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 35983135 - 35983036
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| ||| |||||||||||||||||| |||||| ||| | ||  ||||||||||||  | |||||||| ||||||||| | || ||| ||||||||||    
T  35983135 tcaatggaaaagattatacctgacagagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacagacttaagaagaatcaaacgaccaccaa 35983036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 26261662 - 26261593
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcagga 92  Q
    |||||||||||||||||||||||  ||| |||||||||| | ||| ||||||||| ||  ||||||||||    
T  26261662 tcaatagaagagattatacctgaaggagctttgaagaaggaaagagcatagacagatagagaagtcagga 26261593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 5497882 - 5498026
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    |||||||| ||||||||||||||  ||| |||||||||| | |   |||||||||| || || ||||||| ||| || || | |||||| ||||||||||    
T  5497882 tcaatagaggagattatacctgatggagctttgaagaaggaaattgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgaccaccaa 5497981  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| ||||| ||||| ||||||||  ||| ||||||||||||||    
T  5497982 aagatagaaaccgactattccaacccgacagtctagatttaatac 5498026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 6051399 - 6051543
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||| | ||| |||||||||| | ||  ||||||||||||  | |||||||| |||||| || | || ||| |||||||| |    
T  6051399 tcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaatcaaacgaccaccga 6051498  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| || || ||||| | ||||||| ||||||||||||||||||    
T  6051499 aagataggaaccgactttgccaaccagacaatctagatttaatac 6051543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 13867176 - 13867042
Alignment:
Q  32 agagattatacctgacagagt-ttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaagacaga 130  Q
    |||||||||||||||| |||  ||||||||| | ||| |||| |||||||| | |||||||| ||||||||| |  ||||| ||||| |||||||| |||    
T  13867176 agagattatacctgacggagccttgaagaaggaaagagcatatacaggtaatgcagtcaggacagacttaagaaggaccaaccgacctccaaaagagaga 13867077  T
Q  131 aaacgactcttccaaccaaacaatctagatttaat 165  Q
    |||||||| |  || || |||| ||||||||||||    
T  13867076 aaacgactttgtcaccccaacagtctagatttaat 13867042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 32352656 - 32352512
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    |||||||| |||||||||||||   ||| |||||||||| | ||  |||||||||| |  || |||| || ||| || || | |||||| ||||||||||    
T  32352656 tcaatagaggagattatacctgctggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaa 32352557  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| ||||| ||||| ||||||||  ||| ||||||||||||||    
T  32352556 aagagagaaaccgactattccaacccgacagtctagatttaatac 32352512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 48072770 - 48072626
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    |||||||| |||||||||||||   ||| |||||||||| | ||  |||||||||| |  || |||| || ||| || || | |||||| ||||||||||    
T  48072770 tcaatagaggagattatacctgctggagctttgaagaaggaaagcgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaa 48072671  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    |||| ||||| ||||| ||||||||  ||| ||||||||||||||    
T  48072670 aagagagaaaccgactattccaacccgacagtctagatttaatac 48072626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 7396079 - 7395939
Alignment:
Q  9 ttatttaaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataa 107  Q
    |||||||| | ||| ||||  |||||||||||||||||  ||| |||||||||| | ||| |||||||||  || || |||| || |||||| |  | ||    
T  7396079 ttatttaataaagattcaacggaagagattatacctgatggagctttgaagaaggaaagatcatagacagacaaagaggtcaagacagactttaacaaaa 7395980  T
Q  108 ccaatcgaccaccaaaagacagaaaacgactcttccaacca 148  Q
    |||| || || ||||| || |||||||||||||||||||||    
T  7395979 ccaaacggccgccaaaggagagaaaacgactcttccaacca 7395939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 49264225 - 49264167
Alignment:
Q  107 accaatcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
    ||||| |||||||| || || ||||| ||||| |||||||| |||||||||||||||||    
T  49264225 accaagcgaccaccgaacgagagaaaccgactattccaacctaacaatctagatttaat 49264167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 51052706 - 51052820
Alignment:
Q  52 tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaaaagacagaaaacgactcttccaaccaaac 151  Q
    |||||||||| | ||  ||||||||||||  | ||||||||  ||||| || | || ||| |||||||| ||||| || || ||||| | ||||||| ||    
T  51052706 tttgaagaaggaaagtgcatagacaggtagagcagtcaggacggactttagtagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagac 51052805  T
Q  152 aatctagatttaata 166  Q
    |||||||||||||||    
T  51052806 aatctagatttaata 51052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 5809387 - 5809456
Alignment:
Q  34 agattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaag 102  Q
    |||||||||||||| ||| |||||||||| | ||| ||||||||||||| |  ||||||| |||||||||    
T  5809387 agattatacctgacggagctttgaagaaggaaagagcatagacaggtaacgcggtcaggacagacttaag 5809456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 47622432 - 47622279
Alignment:
Q  13 ttaaaagagactcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaa 111  Q
    |||| ||||| ||||| |||||||||||| ||||| ||| |||||| ||| | ||  |||||||||| |  | |||||||| |||||| || |  |  |     
T  47622432 ttaacagagattcaatggaagagattatatctgacggagctttgaaaaaggaaagtgcatagacaggaagagcagtcaggacagactttagaaggattag 47622333  T
Q  112 tcgaccaccaaaagacagaaaacgactcttccaaccaaacaatctagatttaat 165  Q
     |||||||||||||| ||||| |||||   ||||||| ||||||||||||||||    
T  47622332 gcgaccaccaaaagagagaaaccgactacgccaaccagacaatctagatttaat 47622279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 35541830 - 35541974
Alignment:
Q  24 tcaatagaagagattatacctgacagag-tttgaagaagtagagaacatagacaggtaaggaagtcaggatagacttaaggataaccaatcgaccaccaa 122  Q
    ||||| |||||||||||||||||| ||| |||||| ||| | ||  ||||||||||||  | ||||||||  ||||| || | || ||| || ||||| |    
T  35541830 tcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttagaagaatcaaacggccaccta 35541929  T
Q  123 aagacagaaaacgactcttccaaccaaacaatctagatttaatac 167  Q
    | || ||||| ||||| | |||||||  ||||||| |||||||||    
T  35541930 aggaaagaaaccgactttgccaaccagccaatctatatttaatac 35541974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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