View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10175_low_2 (Length: 418)

Name: NF10175_low_2
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10175_low_2
NF10175_low_2
[»] chr8 (7 HSPs)
chr8 (48-102)||(40127429-40127483)
chr8 (48-102)||(4239864-4239918)
chr8 (48-102)||(23083419-23083473)
chr8 (48-90)||(38184128-38184170)
chr8 (48-90)||(17023455-17023497)
chr8 (48-90)||(17553948-17553990)
chr8 (48-90)||(25369270-25369312)
[»] chr5 (7 HSPs)
chr5 (48-102)||(559975-560029)
chr5 (48-102)||(36939048-36939102)
chr5 (48-102)||(39521636-39521690)
chr5 (48-90)||(26670499-26670541)
chr5 (48-90)||(26942096-26942138)
chr5 (48-102)||(36426850-36426904)
chr5 (48-90)||(41999926-41999968)
[»] chr4 (5 HSPs)
chr4 (48-90)||(33465888-33465930)
chr4 (48-102)||(37261398-37261452)
chr4 (48-102)||(31271979-31272033)
chr4 (48-90)||(39318873-39318915)
chr4 (48-90)||(12877548-12877590)
[»] chr3 (7 HSPs)
chr3 (48-102)||(3686595-3686649)
chr3 (48-90)||(18470435-18470477)
chr3 (48-102)||(23662952-23663006)
chr3 (48-90)||(38206144-38206186)
chr3 (48-90)||(24756019-24756061)
chr3 (48-90)||(24765016-24765058)
chr3 (48-90)||(8886447-8886489)
[»] chr2 (7 HSPs)
chr2 (48-102)||(17972209-17972263)
chr2 (48-102)||(30649398-30649452)
chr2 (48-102)||(30654097-30654151)
chr2 (48-90)||(25480372-25480414)
chr2 (48-90)||(25487978-25488020)
chr2 (48-102)||(9182254-9182308)
chr2 (48-85)||(30616168-30616205)
[»] chr1 (4 HSPs)
chr1 (48-102)||(10138508-10138562)
chr1 (48-87)||(16750252-16750291)
chr1 (48-90)||(25853626-25853668)
chr1 (48-102)||(47453720-47453774)
[»] scaffold0070 (2 HSPs)
scaffold0070 (48-90)||(66013-66055)
scaffold0070 (48-90)||(61811-61853)
[»] scaffold0045 (1 HSPs)
scaffold0045 (48-90)||(81573-81615)
[»] chr6 (1 HSPs)
chr6 (48-90)||(12796301-12796343)
[»] chr7 (1 HSPs)
chr7 (48-90)||(21667780-21667822)


Alignment Details
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 40127429 - 40127483
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  40127429 taatcagaaatagttatgaaaacatcgtaccagatgttatagaaccttgaggagg 40127483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 4239864 - 4239918
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  4239864 taatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 4239918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 23083419 - 23083473
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  23083419 taatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 23083473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 38184128 - 38184170
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  38184128 taatcagaaatagttatgaaatcatcgtacgagatgttataga 38184170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 17023497 - 17023455
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  17023497 taatcagaaatagttatgaaaacattgtacaagatgttataga 17023455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 17553990 - 17553948
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  17553990 taatcagaaatagttatgaaaacattgtacaagatgttataga 17553948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 25369270 - 25369312
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  25369270 taatcagaaatagttatgaaaacatcatatgtgatgttataga 25369312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 560029 - 559975
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  560029 taatcagaaatagttatgaaaacatcgtaccagatgttatagaaccttgaggagg 559975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 36939048 - 36939102
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  36939048 taatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 36939102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 39521690 - 39521636
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  39521690 taatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 39521636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 26670541 - 26670499
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  26670541 taatcagaaatagttatgaaaacatcgtaccagatgttataga 26670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 26942138 - 26942096
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  26942138 taatcagaaatagttatgaaaacatcgtaccagatgttataga 26942096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 36426904 - 36426850
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  36426904 taatcataaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 36426850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 41999968 - 41999926
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  41999968 taatcagaaatagttatgaaaacattgtaccagatgttataga 41999926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 33465888 - 33465930
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33465888 taatcagaaatagttatgaaaacatcgtacgagatgttataga 33465930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 37261398 - 37261452
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  37261398 taatcagaaatagttatgaaaacatcgtaccagatgttatagaaccttgatgagg 37261452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 31272033 - 31271979
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||| ||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  31272033 taatcaaaaatagttatgaaaacatcgtactagatgttatagaaccttgatgagg 31271979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 39318915 - 39318873
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  39318915 taatcagaaatagttatgaaaacatcatacgagatgttataga 39318873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 12877590 - 12877548
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  12877590 taatcagaaatagttatgaaaacatcatatgagatgttataga 12877548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 3686649 - 3686595
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  3686649 taatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 3686595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 18470477 - 18470435
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  18470477 taatcagaaatagttatgaaaacatcgtaccagatgttataga 18470435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 23662952 - 23663006
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||| ||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  23662952 taatcaaaaatagttatgaaaacatcgtactagatgttatagaaccttgatgagg 23663006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 38206144 - 38206186
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  38206144 taatcagaaatagttatgaaaacatcgtacaagatgttataga 38206186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 24756019 - 24756061
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  24756019 taatcagaaatagttatgaaaacatcatacgtgatgttataga 24756061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 24765016 - 24765058
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  24765016 taatcagaaatagttatgaaaacatcatacgtgatgttataga 24765058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 8886489 - 8886447
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||| |||||||||||||||||| |||| ||||||||||||    
T  8886489 taatcataaatagttatgaaaacattgtaccagatgttataga 8886447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 17972209 - 17972263
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  17972209 taatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 17972263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 30649452 - 30649398
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  30649452 taatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 30649398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 30654151 - 30654097
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  30654151 taatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggagg 30654097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 25480372 - 25480414
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  25480372 taatcagaaatagttatgaaaacatcgtaccagatgttataga 25480414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 25487978 - 25488020
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  25487978 taatcagaaatagttatgaaaacatcgtaccagatgttataga 25488020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 9182254 - 9182308
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||| ||| ||| |||||||||||| ||| |||||||    
T  9182254 taatcagaaatagttatgaaaatatcataccagatgttatagaacctcgaggagg 9182308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 30616205 - 30616168
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgtt 85  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  30616205 taatcagaaatagttatgaaaacatcgtaggagatgtt 30616168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 10138562 - 10138508
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  10138562 taatcagaaatagttatgaaaacatcgtaccaaatgttatagaaccttgaggagg 10138508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 16750252 - 16750291
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttat 87  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  16750252 taatcagaaatagttatgaaaacatcgtactagatgttat 16750291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 25853668 - 25853626
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  25853668 taatcagaaatagttatgaaaacatcgtatcagatgttataga 25853626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 47453720 - 47453774
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttatagatccttgaggagg 102  Q
    |||||| |||||||||||||||||| |||| |||||||||||| ||| |||||||    
T  47453720 taatcaaaaatagttatgaaaacattgtactagatgttatagaacctcgaggagg 47453774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 66055 - 66013
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  66055 taatcagaaatagttatgaaaacatcatacgtgatgttataga 66013  T

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Target: scaffold0070; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 61853 - 61811
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  61853 taatcagaaatagttatgaaaacatcatatgtgatgttataga 61811  T

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Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 81615 - 81573
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  81615 taattagaaatagttatgaaaacattgtacgagatgttataga 81573  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 12796301 - 12796343
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  12796301 taatcagaaatagttatgaaagcatcgtaggagatgttataga 12796343  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 21667822 - 21667780
Alignment:
Q  48 taatcagaaatagttatgaaaacatcgtacgagatgttataga 90  Q
    |||||||||||||||||||  |||| |||||||||||||||||    
T  21667822 taatcagaaatagttatgagtacattgtacgagatgttataga 21667780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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