View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10175_low_3 (Length: 402)
Name: NF10175_low_3
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10175_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 38585217 - 38585589
Alignment:
| Q |
18 |
catggtggatcagtggttgaacacgagagtaacaaactcaaagaaaaagatggagagaagagaactctgttaactaatttgttagaaaattttgaatgga |
117 |
Q |
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| T |
38585217 |
catggtggatcagtggttgaacacgagagttacaaactcaaagaaaaaggtggagagaagagaactctgttaactaatttgttagaaaattttgaatgga |
38585316 |
T |
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| Q |
118 |
aaaaagtaatgtggcgggagagaatgaaaagtgtgagctaaggtgtgtttgatatttataggctgaagaagagtgaagggtgatcacaaagatgcaccac |
217 |
Q |
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| T |
38585317 |
aaaaagtaatgtggcgggagagaatgaaaagtgtgagctaaggtgtgtgtgatatttataggctgaag---agtgaagggtgatcacaaagatgcaccac |
38585413 |
T |
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| Q |
218 |
tacacgcgctggaactgcttccgttacggtgctgaaagtttattcagatactgtttactttttaaatttgaaaattaaatatgccgtttgatttgacgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38585414 |
tacacgcgctggaactgcttccgttacggtgctgaaagtttatttagatactgttaaatttttaaatttgaaagttaaatatgccgtttgatttgacgat |
38585513 |
T |
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| Q |
318 |
ggttagctacttgcttggtcacgcatatttggttggtgagtgaattggcgcgaaaagggaatagatgattctctgc |
393 |
Q |
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| T |
38585514 |
ggttagctacttgcttggtcacgcatatttggttggtgagtgaattggcgcgaaaagggaatagatgattctctgc |
38585589 |
T |
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