View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10175_low_4 (Length: 379)
Name: NF10175_low_4
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10175_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 45932719 - 45933072
Alignment:
| Q |
1 |
aggtgaaggtgagatgagacaaaccctatgnnnnnnnnncatacatagaatagaaggtaccggaagagtcttaactctttttaacagaagagtcttaact |
100 |
Q |
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| T |
45932719 |
aggtgaaggtgagatgagacaaaccctatgtttttttt-catacatagaatagaaggtaccggaagagtctcaactctttttaacagaagagtcttaact |
45932817 |
T |
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| Q |
101 |
cttaactgcacccaccctatgataatttaccactagctttttcttcactggcactacattccatttcccaatataaaattaaatgccgtaattaatttgc |
200 |
Q |
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| T |
45932818 |
cttaactgcacccaccctatgataatttaccactagctttttcttcactggctctacattccatttcccaatataaaattaaatgccgtaattaatttgc |
45932917 |
T |
|
| Q |
201 |
attgaaccttgaaacaatactagcatctttgaaaagctgaaaatgaaacttctcttataaatttgaaagttagcttaattcatggaagagaagcattaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45932918 |
attgaaccttgaaacaatactagcatctttgaaaagctgaaaatgaaacttctcttataaatttgaaagttagcttaattcatggaagag-------aag |
45933010 |
T |
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| Q |
301 |
cattaagcagcatgcaatgttgcaaacagttgttaacatggaataagctagcccttgatagg |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45933011 |
cattaagcagcatgcaatgttgcaaacagttgttaacatggaataagctagcccttgatagg |
45933072 |
T |
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