View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10175_low_6 (Length: 319)
Name: NF10175_low_6
Description: NF10175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10175_low_6 |
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| [»] scaffold0400 (2 HSPs) |
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| [»] scaffold0365 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 15035514 - 15035793
Alignment:
| Q |
29 |
atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta |
128 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
15035514 |
atattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtacaaactatccta |
15035613 |
T |
|
| Q |
129 |
tcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttt |
228 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |
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| T |
15035614 |
tcttgatctcagctttaattatctcaccgggtctatctcaatttctataggaaagttggccaaaataaaaaatctcatgttacattcgaatcaacttttt |
15035713 |
T |
|
| Q |
229 |
ggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat |
308 |
Q |
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||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
15035714 |
ggccagattcctcgtgaaattgggaatttggtcaacctccagagactatatcttggaaataacagtctttttggcttcat |
15035793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 149 - 308
Target Start/End: Original strand, 14502740 - 14502899
Alignment:
| Q |
149 |
atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat |
248 |
Q |
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|
||||||||||||||||| | ||||||||||||| ||||||||| ||| ||||||| ||| |||||||||||||| ||||||| ||||||| |||||| |
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| T |
14502740 |
atctcactgggtctatccctatttctataggaatgttggccaatatatcaaatctttttttatattccaatcaacttattggccaaattcctcgtgaaat |
14502839 |
T |
|
| Q |
249 |
tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat |
308 |
Q |
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||||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||||| |
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| T |
14502840 |
tgggaatttggtcaacctccaaagactatatcttggaaataacaacctttctggcttcat |
14502899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 14524591 - 14524472
Alignment:
| Q |
40 |
atgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctca |
139 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||| ||||||||||| | |
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| T |
14524591 |
atgtgcaatctagacactcttgatttgtcactaaataaactctctggtagcattcacaatagcattggtaatttgtcaaaactatcctatcttgatctta |
14524492 |
T |
|
| Q |
140 |
gctttaattatctcactggg |
159 |
Q |
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|||| ||||||||||||||| |
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| T |
14524491 |
gcttcaattatctcactggg |
14524472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 14502188 - 14502318
Alignment:
| Q |
29 |
atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta |
128 |
Q |
| |
|
||||||| |||||||| || ||||| ||||||||||||||||||||| | |||||||||| ||||||||| | |||||||||||||||||||||| || |
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| T |
14502188 |
atattggagtgatgtcaaacctagacactcttgatttgtcactaaataatctctctggtaacattcccaaaagtgttggtaatttgtccaaactatctta |
14502287 |
T |
|
| Q |
129 |
tcttgatctcagctttaattatctcactggg |
159 |
Q |
| |
|
|||||||||||| || |||||||||| |||| |
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| T |
14502288 |
tcttgatctcagtttcaattatctcattggg |
14502318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 14534579 - 14534449
Alignment:
| Q |
29 |
atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta |
128 |
Q |
| |
|
||||||| | |||||| | |||| ||||||||||||||||| | || | |||||||||||||||||||||| ||||||||||||||| ||| |||| || |
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| T |
14534579 |
atattggagagatgtctagtctaaaaactcttgatttgtcagttaacaatctctctggtaccattcccaatagcattggtaatttgtcaaaaatatctta |
14534480 |
T |
|
| Q |
129 |
tcttgatctcagctttaattatctcactggg |
159 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |
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| T |
14534479 |
tcttgatctcagtttcaattatctcactggg |
14534449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 302
Target Start/End: Complemental strand, 14524050 - 14523897
Alignment:
| Q |
149 |
atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat |
248 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||| ||| |||| ||| || ||||| ||||| | ||| |||||||||||||||||||||| ||||| |
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| T |
14524050 |
atctcactgggtcaatctctacttctataggaaaattgaccaatatatcatatctccagttataccacaaccaactttttggccacattcctcgcgaaat |
14523951 |
T |
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| Q |
249 |
tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctgg |
302 |
Q |
| |
|
||||||||| ||||||||| ||| ||| |||||||| |||| | ||||||||| |
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| T |
14523950 |
tgggaatttggtcaacctcaagaaactcaatcttggatataataatctttctgg |
14523897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 14534388 - 14534329
Alignment:
| Q |
220 |
caactttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagat |
279 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |
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|
| T |
14534388 |
caacttattggccacattcctcgtgaaattgggaatttggtcaaccttgagagactagat |
14534329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 14466084 - 14466174
Alignment:
| Q |
32 |
ttggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaact |
122 |
Q |
| |
|
|||| |||| |||||||||||| ||| |||| |||||| ||||||||||||||| ||||||| |||||||||| | |||||||||| |
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|
| T |
14466084 |
ttggtgtgaagtccaatctagatactattgagttgtcatataatgaactctctggtcatattcccagtaccattggttttctgtccaaact |
14466174 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 10985 - 11264
Alignment:
| Q |
29 |
atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta |
128 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| || |
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|
| T |
10985 |
atattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactatccta |
11084 |
T |
|
| Q |
129 |
tcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11085 |
tcttgatctcagctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttc |
11184 |
T |
|
| Q |
229 |
ggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat |
308 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
11185 |
ggccacattcctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat |
11264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 5489 - 5557
Alignment:
| Q |
29 |
atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattccca |
97 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||||| ||| ||||||||||| |||||||| |
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|
| T |
5489 |
atattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattccca |
5557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 11628 - 11907
Alignment:
| Q |
29 |
atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgta |
128 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| || |
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|
| T |
11628 |
atattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactatccta |
11727 |
T |
|
| Q |
129 |
tcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11728 |
tcttgatctcagctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttc |
11827 |
T |
|
| Q |
229 |
ggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat |
308 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
11828 |
ggccacattcctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat |
11907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 6133 - 6201
Alignment:
| Q |
29 |
atattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattccca |
97 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||||| ||| ||||||||||| |||||||| |
|
|
| T |
6133 |
atattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattccca |
6201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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