View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_high_13 (Length: 331)
Name: NF10176_high_13
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 33984616 - 33984916
Alignment:
| Q |
19 |
cttggagaggattggtggattactctaaattttatccatatacttaactttgttcaattcttccaaagaaaaatacttgactcgttcaatgtacgttatg |
118 |
Q |
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| T |
33984616 |
cttggagaggattggtggattactctaaattttatccatatacttaactttgttcaattcttcaaaagaaaaatacttgactcgttcaatgtacgttatg |
33984715 |
T |
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| Q |
119 |
ttaggtcaagctgaagcagaattgctaggaaatatatttcaatgtacgttatgttatggaatnnnnnnntcttgtgttttgcgtttggtattttcgaaag |
218 |
Q |
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| T |
33984716 |
ttaggtcaagctgaagcagaattgctaggaaatatatttcaatgtacgttatgttatggaataaaaaaatcttgtgttttgcgtttggtattttcgaaag |
33984815 |
T |
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| Q |
219 |
tactatttgtagaaaatgtactcctctgtaagaatgattattatgatcatgtatttgaccaaaatgttcctggaaataactcaagtaatttctcagccaa |
318 |
Q |
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| T |
33984816 |
tactatttgtagaaaatgtactcctctgtaagaatgattattatgatcatgtatttgaccaaaatgttcctggaaataactcaagtaattcctctgccaa |
33984915 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
33984916 |
t |
33984916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 33963889 - 33963985
Alignment:
| Q |
191 |
tgtgttttgcgtttggtattttcgaaagtactatttgtagaaaatgtactcctctgtaagaatgattattatgatcatgtatttgaccaaaatgttcctg |
290 |
Q |
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| T |
33963889 |
tgtgtttggcgtttggcattttcgaaagtactatttgcagaaaatttactcctccataagaataatta--atg-----gtaattgaccaaaatgttcctg |
33963981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 33979048 - 33979144
Alignment:
| Q |
191 |
tgtgttttgcgtttggtattttcgaaagtactatttgtagaaaatgtactcctctgtaagaatgattattatgatcatgtatttgaccaaaatgttcctg |
290 |
Q |
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| T |
33979048 |
tgtgtttggcgtttggcattttcgaaagtactatttgcagaaaatttactcctccataagaataatta--atg-----gtaattgaccaaaatgttcctg |
33979140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 33958553 - 33958496
Alignment:
| Q |
201 |
gtttggtattttcgaaagtactatttgtagaaaatgtactcctctgtaagaatgatta |
258 |
Q |
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| T |
33958553 |
gtttggcattttcgaaagtagaatttgtagaaaatgtactcttccataagaataatta |
33958496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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