View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_high_2 (Length: 548)
Name: NF10176_high_2
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 39117530 - 39118056
Alignment:
| Q |
1 |
agggggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaaggcttcacactttggtatgctgccgaccaatttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39117530 |
agggggtgggctcccttcttttcaaaataaca--gtgatattagtggtggtcggtcgactctcaaaggcttcacactttggtatgctgccgaccaatttc |
39117627 |
T |
|
| Q |
101 |
actgctgtcaaagtggcaaagttgtttgctcaaatatatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgattttctcagtt |
200 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39117628 |
actgctgtcaaagttgcaaagttgtttgctcaaatatatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgattttctcagtt |
39117727 |
T |
|
| Q |
201 |
gtttttggcgtgaactgtttcattttagtggcacaaagttacgcttgtccactgcgtatcatccacaaagtgatggatagatagaaatcgtcaacaaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39117728 |
gtttttggcgtgaactgtttcattttagtggcacaaagttacgcttgtccactgcgtatcatccacaaagtgatggatagatagaaatcgtcaacaaaac |
39117827 |
T |
|
| Q |
301 |
gtttcagcagtagctacggtgttttgtgcacgacaagcctaaactctgggggcgatacaattacattggtccgagtggcacttcaatacagtaagtcact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
39117828 |
gtttcagcagtagctacggtgttttgtgcacgacaagcctaaactctgggggcaatacaattacattggtccaagtggcacttcaatacaggaagtcact |
39117927 |
T |
|
| Q |
401 |
ctgccacagggttgtctgtgtttcaggttttttatagttgcgaaccaccctccctgtcccattctgtttccaactccataatctgcaggtcctgtaccaa |
500 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39117928 |
ctgccacagggttgtctgtgtttcaggttgtttatagtcgcgaaccaccctccctgtcccattctgtttccaactccataatctgcaggtcctgtaccaa |
39118027 |
T |
|
| Q |
501 |
gaactatcagaccgagaggaagtcctaca |
529 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
39118028 |
gaactatcagaccgagaggaagtcctaca |
39118056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 136 - 526
Target Start/End: Complemental strand, 38611694 - 38611307
Alignment:
| Q |
136 |
atatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgatttt-ctcagttgtttttggcgtgaactgtttcattttagtggcac |
234 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||| ||||||||| | |||||||||| |
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| T |
38611694 |
atatgcaagctacatggaacggcgaagactcttgta--tctgaccgtgacccgatttttctcagtcgtttttggcgttaactgtttcgtcttagtggcac |
38611597 |
T |
|
| Q |
235 |
aaagttacgcttgtccactgcgtatcatccacaaagtgatggatagatagaaatcgtcaacaaaatgtttcagcagtagctacggtgttttgtgcacgac |
334 |
Q |
| |
|
|||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||||||| |
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| T |
38611596 |
aaagttacgcctggccattgcatatcatccacaaagtgatggatagatagaaatcgtcaacaaaacgcttcagcagtacctacggtgttttctgcacgac |
38611497 |
T |
|
| Q |
335 |
aagcctaaactctgggggcgatacaattacattggtccgagtggcacttcaatacagtaagtcactctgccacagggttgtctgtgtttcaggtttttta |
434 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| ||| ||| |||||||| |||||||||||||||||| |||||||||||||||||| | || |
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| T |
38611496 |
aagcctaaactctgggggcgatac--ttacattgggccgaatgggactacaatacagcaagtcactctgccacaggtttgtctgtgtttcaggttgtcta |
38611399 |
T |
|
| Q |
435 |
tagttgcgaaccaccctccctgtcccattctgtttccaactccataatctgcaggtcctgtaccaagaactatcagaccgagaggaagtcct |
526 |
Q |
| |
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|||| |||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
38611398 |
tagtcgcgaaccaccttccctgtcccattatgtttccaactccataatcagcaggtcctggaccattaactatcaggccgagaggaagtcct |
38611307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38612786 - 38612464
Alignment:
| Q |
1 |
agggggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaaggcttcacactttggtatgctgccgaccaatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
38612786 |
agggggtgggctcccttcttttcaaaatcacactgtgatattagtggtggtcggtcgactctcaaaggcttcacactttggtatactgccgatcaatttc |
38612687 |
T |
|
| Q |
101 |
actgctgtcaaagtggcaaagttgtttgctcaaat-atatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgattttctcagt |
199 |
Q |
| |
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| || ||||||||| ||| ||||||| | |||||| ||||||||||| |||| |||||| ||||||| |||| ||| ||||||||||||||||||||| |
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| T |
38612686 |
aatgttgtcaaagttgcagagttgttcgttcaaatgatatgcaagctgcataaaatggc-aagactcatgta--tcttaccgtgacccgattttctcagt |
38612590 |
T |
|
| Q |
200 |
tgtttttggcgtgaactgtttcattttagtggcacaaagttacgcttgtccactgcgtatcatccacaaagtgatggatagatagaaatcgtcaacaaaa |
299 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
38612589 |
cgtttttggcgtgaactgtttcgtcttagtggcacaaagttacgcttgtctactgtgtatcatccacaaagtgatggataggtagaaatcgtcaacaaaa |
38612490 |
T |
|
| Q |
300 |
tgtttcagcagtagctacggtgtttt |
325 |
Q |
| |
|
|||||||||| |||||||||||| |
|
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| T |
38612489 |
cacttcagcagtacctacggtgtttt |
38612464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 173 - 529
Target Start/End: Original strand, 39119910 - 39120270
Alignment:
| Q |
173 |
atctggccgtgacccgatttt-ctcagttgtttttggcgtgaactgtttcattttagtggcacaaagttacgcttgtccactgcgtatcatccacaaagt |
271 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||| | |||| |
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|
| T |
39119910 |
atctgcccgtgacccgatttttctcagtcattttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctagaaagc |
39120009 |
T |
|
| Q |
272 |
gatggatagatagaaatcgtcaacaaaatgtttcagcagtagctacggtgttttgtgcacgacaagcctaaactctgggggcgatacaattacattggtc |
371 |
Q |
| |
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||| | |||||||||||| ||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
39120010 |
gatag-tagatagaaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatac--ttacattgggc |
39120106 |
T |
|
| Q |
372 |
cgagtggcacttcaatacagtaagtcactctgccacagggttgtctgtgtttcaggttttttatagttgcgaaccaccct------ccctgtcccattct |
465 |
Q |
| |
|
|||||||||| | |||| | |||||||||||||||| | ||||||| |||||||||| | |||||| || |||| |||| |||||||||| | | |
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|
| T |
39120107 |
tgagtggcactacgatactgcaagtcactctgccacaagtttgtctgcgtttcaggttgtatatagtcgcaaacccccctccctgaccctgtcccactat |
39120206 |
T |
|
| Q |
466 |
gtttccaactccataatctgcaggtcctgtaccaagaactatcagaccgagaggaagtcctaca |
529 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||| |
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|
| T |
39120207 |
gtttccaactccataatcagcaggtcctgaaccaagaattatcagaccaagaggaagtcctaca |
39120270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 39119789 - 39119898
Alignment:
| Q |
5 |
ggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaaggcttcacactttggtatgctgccgaccaatttcactg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39119789 |
ggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcggtcgactctcaaaggcttcacaatttggtatgctgccgaccaatttcactg |
39119888 |
T |
|
| Q |
105 |
ctgtcaaagt |
114 |
Q |
| |
|
|||||||||| |
|
|
| T |
39119889 |
ctgtcaaagt |
39119898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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