View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_high_29 (Length: 249)
Name: NF10176_high_29
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 35532848 - 35532605
Alignment:
| Q |
3 |
tgaatataaaaagtagacaatttatgcctctgaaatggttcaaactgatttattttgtttcaaatgacaattggccaaatgctagcctaagctatggagt |
102 |
Q |
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| T |
35532848 |
tgaatataaaaagtagacaatttatgcctctgaaatggttcaaactgattcattttgtttcaattgacaattggccaaatgctagcctaagctatggagt |
35532749 |
T |
|
| Q |
103 |
tttgacacatattctgcaccttgtaatgtgttgaaggacctttctgtgataaaaacttgttttatttgttgcatgtggtagttcaatgaaattatctgta |
202 |
Q |
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| T |
35532748 |
tttgacacatattctgcaccttgtattgtgttgaagaacctttctgtgataaaaacttgttttatttgttgcatgtggtagttcaatgaaattatctgta |
35532649 |
T |
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| Q |
203 |
ttcctgatttttgctaaaactcttcactttcttctctgcttctc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35532648 |
ttcctgatttttgctaaaactcttcactttcttctctgtttctc |
35532605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 32703598 - 32703812
Alignment:
| Q |
5 |
aatataaaaagtagacaatttatgcctctgaaatggttcaaactgatttattttgtttcaaatgacaattggccaaatgctagcctaagctatggagttt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||| | ||||| |
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| T |
32703598 |
aatataaaaagtagacaatttatgcctctgaaatggttcaaactgattcattttgtttcaaatgacaattgaccaaatgttagcctaaactaagaagttt |
32703697 |
T |
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| Q |
105 |
tgacacatattctgcaccttgtaatgtgttgaaggacctttctgtgataaaaacttgttttatttgttgcatgtggtagttcaatgaaattatctgtatt |
204 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||| | ||| ||| | || | |||||| |
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| T |
32703698 |
ggacacatattctgcaccttgtaatgcgttgaaggacctttttgtgataaaaccttgttttatctgttgcatgtgattgtttaataattttttttgtatt |
32703797 |
T |
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| Q |
205 |
cctgatttttgctaa |
219 |
Q |
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||||||||||||||| |
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| T |
32703798 |
cctgatttttgctaa |
32703812 |
T |
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