View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10176_high_31 (Length: 235)

Name: NF10176_high_31
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10176_high_31
NF10176_high_31
[»] chr4 (7 HSPs)
chr4 (17-228)||(11468617-11468828)
chr4 (17-228)||(11522633-11522844)
chr4 (47-228)||(11445645-11445826)
chr4 (47-228)||(11547264-11547445)
chr4 (47-228)||(11507033-11507214)
chr4 (72-228)||(34783870-34784026)
chr4 (72-228)||(34775649-34775805)
[»] scaffold0794 (1 HSPs)
scaffold0794 (47-228)||(1690-1871)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 11468828 - 11468617
Alignment:
Q  17 aagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11468828 aagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaaca 11468729  T
Q  117 tgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11468728 tgtatacagctttataagttccatggcactcaaatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaa 11468629  T
Q  217 ttagcctcatct 228  Q
    ||||||||||||    
T  11468628 ttagcctcatct 11468617  T

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Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 11522633 - 11522844
Alignment:
Q  17 aagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11522633 aagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaaca 11522732  T
Q  117 tgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11522733 tgtatacagctttataagttccatggcactcaaatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaa 11522832  T
Q  217 ttagcctcatct 228  Q
    ||||||||||||    
T  11522833 ttagcctcatct 11522844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 11445826 - 11445645
Alignment:
Q  47 aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact 146  Q
    ||||||||| ||  |||||||| |||||||||| |||||| |||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||||||    
T  11445826 aaatggattccagtagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcact 11445727  T
Q  147 caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct 228  Q
    ||||||||||||||| ||||| ||||  |||||||||||||| |||||||| || |||||| || |||||||||| ||||||    
T  11445726 caaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatct 11445645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 11547264 - 11547445
Alignment:
Q  47 aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact 146  Q
    ||||||||| ||  |||||||| |||||||||| |||| | |||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||||||    
T  11547264 aaatggattccagtagcaatggcagtgaagaaagtcagttttatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcact 11547363  T
Q  147 caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct 228  Q
    ||||||||||||||| ||||| ||||  |||||||||||||| |||||||| || |||||| || |||||||||| ||||||    
T  11547364 caaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatct 11547445  T

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Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 11507033 - 11507214
Alignment:
Q  47 aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact 146  Q
    ||||||||||||  |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| ||||| ||||||||| ||||||||||||    
T  11507033 aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcact 11507132  T
Q  147 caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct 228  Q
    |||||| || ||||| ||||| |||| |||||||||||| || |||||||| || |||||| || |||||||||| ||||||    
T  11507133 caaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatct 11507214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 34783870 - 34784026
Alignment:
Q  72 tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaata 171  Q
    |||||||| | | ||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||||||| ||  |||| ||||| |||    
T  34783870 tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggcactcaaatcagccatggaactaggcata 34783969  T
Q  172 gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct 228  Q
    |  ||||||||||| || |||||||| || |||||| || |||||||||||||||||    
T  34783970 gctgatgcaatccataaccatggaaaaccaatgactctttctgaattagcctcatct 34784026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 34775649 - 34775805
Alignment:
Q  72 tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaata 171  Q
    |||||||| | | ||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||| |||||||| ||  |||| ||||| |||    
T  34775649 tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaactaggcata 34775748  T
Q  172 gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct 228  Q
    |  |||||||| ||||| |||||||| || |||||| || ||||| |||||||||||    
T  34775749 gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct 34775805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 1690 - 1871
Alignment:
Q  47 aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact 146  Q
    ||||||||||||  |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| ||||| ||||||||| ||||||||||||    
T  1690 aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcact 1789  T
Q  147 caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct 228  Q
    |||||| || ||||| ||||| |||| |||||||||||| || |||||||| || |||||| || |||||||||| ||||||    
T  1790 caaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatct 1871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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