View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_high_8 (Length: 389)
Name: NF10176_high_8
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 119 - 375
Target Start/End: Original strand, 36746178 - 36746440
Alignment:
| Q |
119 |
gtgattcaaaataagttattattaaatcaaatgtaaattttggtcgacaaataaatct-------gactattaaaatagataattgaacatcatttatac |
211 |
Q |
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| T |
36746178 |
gtgattcaaaataagttattattaaatcaaatgtaaattttggtcgacaaataaatctcaaaattgactattaaaatagataattgaacatcatttatac |
36746277 |
T |
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| Q |
212 |
aaaaataaaataataacacttacgtaactattattaactctattgattaatatatgtatactatagtacaagaaaagtttgattcttgttttttaacttt |
311 |
Q |
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| T |
36746278 |
aaaaataaaataataacacttacgtaactattattaactctattgattaatatatgtatactatagtacaagaaaagtttgattcttg-tttttaacttt |
36746376 |
T |
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| Q |
312 |
tgtgttcctttccaagcctacactcgctatcttttcgtttcattgaattgttgttgtatattat |
375 |
Q |
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| T |
36746377 |
tgtgttcctttccaagcctacactcgctatctttttgtttcattgaattgttgttgtatattat |
36746440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 36746075 - 36746110
Alignment:
| Q |
16 |
agcacagagagtatattatgtattttacaccgttat |
51 |
Q |
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| T |
36746075 |
agcacagagagtatattatgtattttacaccgttat |
36746110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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