View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_high_9 (Length: 381)
Name: NF10176_high_9
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 22 - 365
Target Start/End: Original strand, 1815670 - 1816013
Alignment:
| Q |
22 |
gcacagagcttagcttgtttcgtcgtcgtcatgggtcagtctttattgggtattgcttgtcgggtcttgtagccgattaggaacaagatttaatttttat |
121 |
Q |
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| T |
1815670 |
gcacagagcttagcttgtttcgtcgtcgtcatgggtcagtctttattgggtattgcttgtcgggtcttgtagccgattaggaacaagatttaatttttat |
1815769 |
T |
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| Q |
122 |
actctttcggtataaaattatttaacacatgcatcaaatgtcgtgttgtcgtgtcaattaaagaatatgaaaacacatcggtttttatattttttaattg |
221 |
Q |
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| T |
1815770 |
actctttcggtataaaattatttaacacatgcatcaaatgtcgtgttgtcgtgtcaattaaagaatatgaaaacacatcggtttttatattttttaattg |
1815869 |
T |
|
| Q |
222 |
atgtgacatgcatgtgtaaaataattgtacaataataaggtatattaattaaactcgtcatttatatctgttgttttagaagtagttattattaaagtca |
321 |
Q |
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| T |
1815870 |
atgtgacatgcatgtgtaaaataattgtacaataataaagtatattaattaaactcgtcatttatatctgttgttttagaagtagttattattaaagtca |
1815969 |
T |
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| Q |
322 |
aaccatttttatagttgacagttatgattgattgatggtgtaaa |
365 |
Q |
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| T |
1815970 |
aaccatttttatagttgacagttatgattgattgatggtgtaaa |
1816013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 18358792 - 18358845
Alignment:
| Q |
138 |
attatttaacacatgcatcaaatgtcgtgttgtcgtgtcaattaaagaatatga |
191 |
Q |
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| T |
18358792 |
attattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatga |
18358845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 31053098 - 31053037
Alignment:
| Q |
137 |
aattatttaacacatgcatcaaatgtcgtgttgtcgtgtcaattaaagaatatgaaaacaca |
198 |
Q |
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| T |
31053098 |
aattattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatgaaaacaca |
31053037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 55260006 - 55259915
Alignment:
| Q |
137 |
aattatttaacacatgcatcaaatgtcgtgttgtcgtgtcaattaaagaatatgaaaacacatcggtttttatattttttaattgatgtgaca |
229 |
Q |
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| T |
55260006 |
aattattttacgcatgtatctaatgatgtgttgtcatgtcaattgatgaatatgaaaacacat-gtttatcatattcattaattgatgtgaca |
55259915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 14717394 - 14717334
Alignment:
| Q |
137 |
aattatttaacacatgcatcaaatgtcgtgttgtcgtgtcaattaaagaatatgaaaacac |
197 |
Q |
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| T |
14717394 |
aattattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatatgaaaacac |
14717334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 26514980 - 26515024
Alignment:
| Q |
233 |
atgtgtaaaataattgtacaataataaggtatattaattaaactc |
277 |
Q |
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| T |
26514980 |
atgtgtaaaataattatacactaataaagtatactaattaaactc |
26515024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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