View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10176_low_1 (Length: 815)
Name: NF10176_low_1
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 168 - 797
Target Start/End: Original strand, 23030565 - 23031188
Alignment:
| Q |
168 |
ttttgatgtgtaaatgct--aacaatgacatacttcaattttacacgcaaaaaatgttttgccaatttcaaccattttgcatttcacacgatttataagg |
265 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23030565 |
ttttgatgtgtaaatgctctaacaatgacatacttcaattttacacgcaaaaaatgttttgccaatttcaaccattttgcatttcacacgatttataac- |
23030663 |
T |
|
| Q |
266 |
aaagcgaaatatatgtgatacacttggcttttaatctaaaaatgttgtgattatatgatgaaaattgcaacaaaatttgcactacatataaagtgatacg |
365 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23030664 |
-------aatatatgtgataaacttggcttttaatctaaaaatgttgtgattatatgatgaaaattgcaacaaaatttgcactacatataaagtgatacg |
23030756 |
T |
|
| Q |
366 |
taataattatggtgattgtgnnnnnnngtttataggttgtgtgcaaatgggagcaggtggtagagcctctaatcctccatcacaaaggaaaatagagaat |
465 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23030757 |
taataattattgtgattgtgtttttttctttataggttgtgtgcaaatgggagcaggtggtagagcctctaatcctccatcacaaaggaaaatagagaat |
23030856 |
T |
|
| Q |
466 |
gatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattccaccacattgttttaaccgttcattgatta |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23030857 |
gatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattccaccacattgttttcaccgttcattgatta |
23030956 |
T |
|
| Q |
566 |
gatcattttcctatgtcattgttgaccttaccatagcatcaatccttgtctacatagccacaaattattttcctacccttccacataacctctcattttt |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23030957 |
gatcattttcctatgtcattgttgaccttaccatagcatcaatccttgcctatatagccacaaattactttcctacccttccacataacctctcattttt |
23031056 |
T |
|
| Q |
666 |
ggcgtgggccgtttattgggtcatccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
765 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23031057 |
ggcgtggcccgtttattgggccatccaaggatgcattctaaccggagtttgggtcattgcacatgaatgtggccatcatgcatttagtaattatcaatgg |
23031156 |
T |
|
| Q |
766 |
gtcgacgatttagttggccttgttcttcattc |
797 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
23031157 |
gtcgacgatttagttggccttgtccttcattc |
23031188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 23030372 - 23030526
Alignment:
| Q |
18 |
acttgtacctagtttacttattacttagttgtttagtttgtattgcgcaagctacttaattattttgcatatgttagttagattgtttacgttgtttcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23030372 |
acttgtacctagtttacttattacttagttgtttagtttttattgcacaagctacttaattattttgcatatgttagttagattgtttacgttgtttcat |
23030471 |
T |
|
| Q |
118 |
ctataaaccataaacgttgaagccaaagtcaccacacgttatcaatgaaattttg |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23030472 |
ctataaaccataaacgttgaagccaaagtcaccacacgttatcaatgaaattttg |
23030526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 765
Target Start/End: Original strand, 50593858 - 50593934
Alignment:
| Q |
689 |
tccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
765 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| || || || |||||||| ||||||||||||||||| || |||||| |
|
|
| T |
50593858 |
tccaaggttgcattctcaccggtgtttgggtgatagctcatgaatgtggtcaccatgcatttagtaactaccaatgg |
50593934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 688 - 791
Target Start/End: Original strand, 37019912 - 37020015
Alignment:
| Q |
688 |
atccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttg |
787 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||||||| || ||||||||||||||||| ||| | ||||||||| | || ||| |||||||||| |
|
|
| T |
37019912 |
atccaaggttgcatccttaccggtgtttgggtcattgcacatgagtgtggccaccatgcattcagtgactatcaatggcttgatgatacagttggcctta |
37020011 |
T |
|
| Q |
788 |
ttct |
791 |
Q |
| |
|
|||| |
|
|
| T |
37020012 |
ttct |
37020015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University