View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_11 (Length: 421)
Name: NF10176_low_11
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 22795302 - 22794898
Alignment:
| Q |
16 |
caagatcaagaccctttctcttttccctctttttaattttctcgtcaacactatcaggcctttcatcatcctcagagctatcctcatcatcagcaagctg |
115 |
Q |
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| T |
22795302 |
caagatcaagaccctttctcttttccctctttttaattttctcgtcaacactatcaggcctttcatcatcctcagagctatcctcatcatcagcaagctg |
22795203 |
T |
|
| Q |
116 |
ttcatcattgaagctttcattgtttgacaaacttttccttatgaacctgcagaagcatgta--tacaaattgctcatgacattgaatacgagcaaaaaga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||||| |
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| T |
22795202 |
ttcatcattgaagctttcattgtttgacaaacttttccttatgaacctgcagaagaaaacacatacaaaatgctcatgacattgaatacgagcaaaaaga |
22795103 |
T |
|
| Q |
214 |
aaacacatat--tttttcaaactaaaaagacgagtagttggaagtaaaaatgcatacataccccatgaaagaacggcgacgcgagttgattttattttca |
311 |
Q |
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|||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795102 |
aaacacatatattttttcaaactaaaaagatgagtagttgtaagtaaaaatgcatacataccccatgaaagaacggcgacgcgagttgattttattttca |
22795003 |
T |
|
| Q |
312 |
ggggtctcagtgatgggatgcattgaattaaaatgagtatctcctc---ctccagaatgtgatttgcgtcgaaatgaaggcaaagtactctcggattttc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795002 |
ggggtctcagtgatgggatgcattgaattaaaatgagtatctcctcctcctccagaatgtgatttgcgtcgaaatgaaggcaaagtactctcggattttc |
22794903 |
T |
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| Q |
409 |
ttctc |
413 |
Q |
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||||| |
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| T |
22794902 |
ttctc |
22794898 |
T |
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