View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10176_low_12 (Length: 398)
Name: NF10176_low_12
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 26425263 - 26425625
Alignment:
| Q |
20 |
aattccatccaaaacatccactggaaaccaatctttcaaaatctcttcattccattgaccatttgtatccaccaactcagacaccatgacattcctcaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26425263 |
aattccatccaaaacatccactggaaactaatctttcaaaatctcttcattccattgaccatttgtatccaccaactcagacaccatgacattcctcaaa |
26425362 |
T |
|
| Q |
120 |
catccaaatttgcaattttaaaaccacaatccacccaacattgcttccatgcgtgaatactttgtccatactcaaaatccttcaacttaggccaaagctt |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26425363 |
catccaaatttacaattttaaaaccacaatccacccaacattgtttccatgcgtgaatactttgtccatactcaaaatccttcaacttaggccaaagctt |
26425462 |
T |
|
| Q |
220 |
agttaaatttttccataagcataaatcattagacttagctatgacattatcaagatcatgggtaacattacggcaatacttaccttgcataacatcacac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26425463 |
agttaaatttttccataagcataaatcattagacttagctatgacattatcaagatcatgggtatcattacggcaatacttaccttgcataacatcacac |
26425562 |
T |
|
| Q |
320 |
cataaagccttctcaccacacaaaatcttccatcttattttaataaggcaaagcttggttcat |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26425563 |
cataaagccttctcaccacacaaaatcttccatcttattttcataaggcaaagcttggttcat |
26425625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University