View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_13 (Length: 390)
Name: NF10176_low_13
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 43533019 - 43532660
Alignment:
| Q |
14 |
agagctttagatgttatctatgagctaggattggagaggtaaattaatgtttccactattagagtctcaaatatttttattatgagcttataaaagttat |
113 |
Q |
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| T |
43533019 |
agagctttagatgttatctatgagctaggattggagaggtaaattaatgtttccactattagagtctcaaatatttttattatgagcttataaaagttat |
43532920 |
T |
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| Q |
114 |
aatcatgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgag |
213 |
Q |
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| T |
43532919 |
aatcatgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgag |
43532820 |
T |
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| Q |
214 |
attataatcaatccttctcttctgtttcttgatgaaccaacatctggtttggattctacaacagccttgagaatagtccagatgctacatggtatagctg |
313 |
Q |
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| T |
43532819 |
attataatcaatccttctcttctgtttcttgatgaaccaacatctggtttggattctacaacagccttgagaatagtccagatgctacatgatatagctg |
43532720 |
T |
|
| Q |
314 |
aggtatttgttttcactctttccattgagacatttacattcgttaaaggttttaactctt |
373 |
Q |
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| T |
43532719 |
aggtatttgttttcactctttccattgagacatttacattcattaaaggttttaactctt |
43532660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 118 - 320
Target Start/End: Original strand, 24126561 - 24126763
Alignment:
| Q |
118 |
atgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgagatta |
217 |
Q |
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| T |
24126561 |
atgcatgaaaacaggtgccaagatactatgatcggtggttcatttgttcgtggagtatccggtggagagaggaagagagtttgtattggtaatgagatta |
24126660 |
T |
|
| Q |
218 |
taatcaatccttctcttctgtttcttgatgaaccaacatctggtttggattctacaacagccttgagaatagtccagatgctacatggtatagctgaggt |
317 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| || || |||||||| || | ||||| ||||| |
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| T |
24126661 |
taatcaatccttccattctgtttcttgatgaaccaacatctggtttggattcgacaaccgccttgaagatcgttcagatgctgcaagacatagcagaggt |
24126760 |
T |
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| Q |
318 |
att |
320 |
Q |
| |
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||| |
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| T |
24126761 |
att |
24126763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 24144787 - 24144944
Alignment:
| Q |
118 |
atgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgagatta |
217 |
Q |
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||||||| ||| ||||||||| | |||||||| || | ||| ||||| | ||| |||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
24144787 |
atgcatgaaaacaggtgccaaaatactatgattggtgattcgtttgttcccggattatctggtggagagaggaagagagtttgtattggcaatgagatca |
24144886 |
T |
|
| Q |
218 |
taatcaatccttctcttctgtttcttgatgaaccaacatctggtttggattctacaac |
275 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24144887 |
taatcaatccttccattctgtttcttgatgaaccaacatctggtttggattcaacaac |
24144944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 33718638 - 33718680
Alignment:
| Q |
236 |
tgtttcttgatgaaccaacatctggtttggattctacaacagc |
278 |
Q |
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| T |
33718638 |
tgtttcttgatgaaccaacttctggtttggattctactacagc |
33718680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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