View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10176_low_16 (Length: 371)

Name: NF10176_low_16
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10176_low_16
NF10176_low_16
[»] chr5 (3 HSPs)
chr5 (48-356)||(28220180-28220485)
chr5 (175-356)||(42555578-42555759)
chr5 (20-151)||(42555759-42555890)
[»] chr8 (2 HSPs)
chr8 (80-356)||(43745107-43745381)
chr8 (159-267)||(12528841-12528949)
[»] chr7 (29 HSPs)
chr7 (48-355)||(3147501-3147805)
chr7 (77-270)||(7877453-7877646)
chr7 (80-355)||(8585341-8585616)
chr7 (76-204)||(8602228-8602356)
chr7 (80-351)||(8628790-8629061)
chr7 (83-355)||(8667680-8667952)
chr7 (77-264)||(29581567-29581754)
chr7 (83-267)||(8576587-8576771)
chr7 (76-287)||(8382579-8382790)
chr7 (76-194)||(6789766-6789884)
chr7 (80-270)||(13333176-13333366)
chr7 (83-267)||(8570572-8570756)
chr7 (77-264)||(29577395-29577582)
chr7 (78-264)||(8590894-8591080)
chr7 (83-267)||(8581961-8582145)
chr7 (80-264)||(8636069-8636253)
chr7 (76-204)||(8647131-8647259)
chr7 (48-194)||(1301689-1301836)
chr7 (80-355)||(8671265-8671540)
chr7 (80-355)||(10494009-10494284)
chr7 (76-270)||(8559587-8559781)
chr7 (80-185)||(17260499-17260604)
chr7 (80-185)||(17268197-17268302)
chr7 (83-267)||(8545893-8546077)
chr7 (134-194)||(8640343-8640403)
chr7 (134-183)||(8610229-8610278)
chr7 (76-204)||(8538290-8538418)
chr7 (119-189)||(8654747-8654817)
chr7 (106-288)||(27830577-27830759)
[»] chr6 (1 HSPs)
chr6 (81-355)||(28910841-28911115)
[»] chr2 (9 HSPs)
chr2 (75-288)||(12245108-12245321)
chr2 (80-264)||(16657243-16657427)
chr2 (80-243)||(12258328-12258491)
chr2 (80-288)||(11999652-11999860)
chr2 (87-355)||(12234954-12235222)
chr2 (83-194)||(7542487-7542598)
chr2 (83-194)||(16661788-16661899)
chr2 (135-194)||(43625725-43625784)
chr2 (80-203)||(14703666-14703789)
[»] chr1 (3 HSPs)
chr1 (80-293)||(34466490-34466703)
chr1 (89-194)||(15595308-15595413)
chr1 (84-189)||(4678359-4678464)
[»] chr4 (4 HSPs)
chr4 (80-355)||(9335526-9335801)
chr4 (83-203)||(35132709-35132829)
chr4 (83-355)||(30775513-30775785)
chr4 (77-194)||(54396678-54396795)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 356
Target Start/End: Original strand, 28220180 - 28220485
Alignment:
Q  48 ttcttttgtccaatccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggc 147  Q
    ||||||||||||||||||| |||||||||   ||||||||||||||||||| |||| | | |||||| ||||||||||| |||||||||||||| |||||    
T  28220180 ttcttttgtccaatccatatgcaatagca---gcagcagtgggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggc 28220276  T
Q  148 tttccgctgataatcattgaaataagccggcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttaga 247  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| | ||||||||| |||||||||||||  |||||||||||||||    
T  28220277 tttccgctgataatcattgaaataagcaggcacagtaataactgcattcttgacaggaaattccaaaaaggcctctgcaatctcacgcatctttgttaga 28220376  T
Q  248 atcatagatgagatttcttcggcgcataggtgtttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatg 347  Q
    | ||||||||||||||||||||| |||||||| ||||||||||||| |||| | |||||||||||||| ||| | ||  |||||||||||||||||||||    
T  28220377 accatagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcatgggtttgtcgttcgttccggaaatgaccttgaatg 28220476  T
Q  348 gccacaact 356  Q
    |||||||||    
T  28220477 gccacaact 28220485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 175 - 356
Target Start/End: Complemental strand, 42555759 - 42555578
Alignment:
Q  175 cggcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcat 274  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555759 cggcacagtaacaactgcattcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcat 42555660  T
Q  275 aggtgtttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaact 356  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555659 aggtgtttctcctgtccctcgtacgttacataaatcatgggcttgccatttattccggaaatgaccttgaatggccacaact 42555578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 42555890 - 42555759
Alignment:
Q  20 tcacttggaagaggttgcaatgctttatttcttttgtccaatccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555890 tcacttggaagaggttgcaatgctttatttcttttgtccaatccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagac 42555791  T
Q  120 cagcaatagtacctgcatctattgtggctttc 151  Q
    ||||||||||||||||||||||||||||||||    
T  42555790 cagcaatagtacctgcatctattgtggctttc 42555759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 80 - 356
Target Start/End: Original strand, 43745107 - 43745381
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    ||||||||||||||||||||||||||||||||||  || |||||||| | ||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  43745107 gcagcagtgggttcattgattatcttcataacatcaagcccagcaatggcaccagcatcta--gtggctttccgctgataatcattgaaataagccggca 43745204  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtg 279  Q
    ||||||||||||||| ||||||||||| || |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||    
T  43745205 cagtaacaactgcattcttgacaggcaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgagatttcttcggcacataggtg 43745304  T
Q  280 tttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaact 356  Q
     ||||||||||||| |||| | |||||||||| ||| ||| |||| | |||||||||||||||||| ||||||||||    
T  43745305 cttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaact 43745381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 12528841 - 12528949
Alignment:
Q  159 aatcattgaaataagccggcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatga 258  Q
    ||||||||||||| || ||||| ||||  ||||||| ||| |||||    || | |||||| ||||||||||  ||||||| || |||||||||||| ||    
T  12528841 aatcattgaaatacgctggcaccgtaatcactgcattcttaacaggtgactcaagaaatgcatctgcaatctctcgcatctgtgatagaatcatagagga 12528940  T
Q  259 gatttcttc 267  Q
     ||||||||    
T  12528941 tatttcttc 12528949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 48 - 355
Target Start/End: Original strand, 3147501 - 3147805
Alignment:
Q  48 ttcttttgtccaatccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggc 147  Q
    |||| ||||||| |||||| |||||||| ||||||| ||   ||||||||||||||  ||||| ||| || |||||||||  ||| ||||||||||| ||    
T  3147501 ttctcttgtccagtccatacgcaatagctgcagcagtag---gttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgc 3147597  T
Q  148 tttccgctgataatcattgaaataagccggcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttaga 247  Q
    ||||||||||  ||||||||||||||| || || ||||||||||||| ||||||||||| ||| |||||  |||||||| ||||||||||||||||||||    
T  3147598 tttccgctgagcatcattgaaataagcaggtacggtaacaactgcattcttgacaggcaattctaaaaactcctctgcagtcttgcgcatctttgttaga 3147697  T
Q  248 atcatagatgagatttcttcggcgcataggtgtttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatg 347  Q
    | |||||||||||||||||| || |||||||| ||||||||||||| | || | || ||||||||||| ||| |||| | |||| |||||||||||||||    
T  3147698 accatagatgagatttcttcagcacataggtgcttctcctgtcccttgcacttaaccgaaatcatgggtttgtcattcactccgcaaatgaccttgaatg 3147797  T
Q  348 gccacaac 355  Q
    ||||||||    
T  3147798 gccacaac 3147805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 270
Target Start/End: Complemental strand, 7877646 - 7877453
Alignment:
Q  77 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccg 176  Q
    ||||||||||| |||||||| ||||||  ||||||||| || || ||||  | ||| |||||| |||||||||| || ||| ||||||||||||||||||    
T  7877646 gcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccg 7877547  T
Q  177 gcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggc 270  Q
    |||||||||||||||||| |||||||||    ||||||||   ||||||||||| |||||||||||| || ||||| ||||| ||||| |||||    
T  7877546 gcacagtaacaactgcattcttgacaggtgactccaaaaacttctctgcaatctcgcgcatctttgtaaggatcatggatgatatttcctcggc 7877453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 355
Target Start/End: Complemental strand, 8585616 - 8585341
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||||||||||||||||||| |||||||||| || |||||||| | ||| ||||| || |||||||| |||||| |||||||||||||||| ||||    
T  8585616 gcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcattgaaataagcaggca 8585517  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtg 279  Q
    |||| ||||||||||  |  |||||   || |||| ||| ||||||||||||   ||| ||||| || || |||||||| ||||| || || |||||||     
T  8585516 cagtcacaactgcattttgaacaggtgatttcaaatatgtctctgcaatcttcttcatgtttgtgaggatgatagatgatatttcctcagcacataggtt 8585417  T
Q  280 tttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaac 355  Q
     || || || |||| |||| | |||| |||||| || ||| |||| |  || || || ||||||||||||||||||    
T  8585416 cttttcttgacccttgtacttaacagtaatcataggtttgtcattaacaccagagataaccttgaatggccacaac 8585341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 8602228 - 8602356
Alignment:
Q  76 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 175  Q
    |||||| ||||| || ||||||||||||  ||| ||||| ||||||||||| | ||| |||||| |||||||||| |||||| ||||||| |||||||||    
T  8602228 agcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagcc 8602327  T
Q  176 ggcacagtaacaactgcatgcttgacagg 204  Q
    ||||||||||||||||||| |||||||||    
T  8602328 ggcacagtaacaactgcattcttgacagg 8602356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 351
Target Start/End: Original strand, 8628790 - 8629061
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    ||||||||||| |||||||||||| |||||||||| || |||||||| | ||| ||||  || |||||||| |||||| |||||||||||||||| ||||    
T  8628790 gcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcattcatggtggcttttcgctgagaatcattgaaataagcaggca 8628889  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtg 279  Q
    | || ||||||||||  || |||||   || |||| | ||||||||||||||   ||| ||||  || || |||||||| ||||| || || |||||||     
T  8628890 cggtgacaactgcattttttacaggtgatttcaaataagcctctgcaatcttcttcatatttgcaaggataatagatgatatttcctcagcacataggtt 8628989  T
Q  280 tttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggcca 351  Q
     ||||| || |||| |||| | |||| |||||| |||||| |||| |  || ||||| ||||||||||||||    
T  8628990 cttctcttgacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggcca 8629061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 355
Target Start/End: Original strand, 8667680 - 8667952
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    ||||| |||||||||||||||   || ||||| || |||||||||||||| |||||||| ||||| || |||||| |||||||||| ||||| |||||||    
T  8667680 gcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggcacag 8667779  T
Q  183 taacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtgttt 282  Q
    ||||||| |||| |||||| |||    ||| | ||||||| |||| ||  ||||||||||| || | |||||| || ||||| || || || | ||| ||    
T  8667780 taacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgctt 8667879  T
Q  283 ctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaac 355  Q
    ||| || |||| |||| | |||| |||||| || ||| |||| |  || ||||| ||||||||||||||||||    
T  8667880 ctcttgacccttgtacttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaac 8667952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 77 - 264
Target Start/End: Complemental strand, 29581754 - 29581567
Alignment:
Q  77 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccg 176  Q
    ||||||||||| ||||| ||||||||| |||| ||||| || ||||| ||| | || |||||| | |||||||| |||||| |||||||||||||||| |    
T  29581754 gcagcagcagttggttcgttgattatcctcattacattgaggccagctataatgccagcatctttggtggcttttcgctgagaatcattgaaataagcag 29581655  T
Q  177 gcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttc 264  Q
    |||| ||||  ||||||| ||| ||||||| ||||||||||  ||||||||| |   |||||||||  || ||||||||||| |||||    
T  29581654 gcacggtaatcactgcattctttacaggcaattccaaaaatttctctgcaatatcatgcatctttgagaggatcatagatgatatttc 29581567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 267
Target Start/End: Original strand, 8576587 - 8576771
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    ||||| |||||||||||||||| ||| ||||| ||||||||||| | |||||||||| | |||||| | || ||  ||||||| |||||||| |||||||    
T  8576587 gcagtcggttcattgattatctgcatgacattgagaccagcaattgcacctgcatctttagtggctcttcgttgggaatcattaaaataagcaggcacag 8576686  T
Q  183 taacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttc 267  Q
     ||  ||||||| ||| |||||  | | || ||| |||||||||||||  ||||||||||  ||||||| |||||| ||||||||    
T  8576687 aaatcactgcattcttaacaggtgtctgcagaaaagcctctgcaatctctcgcatctttgagagaatcacagatgatatttcttc 8576771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 287
Target Start/End: Complemental strand, 8382790 - 8382579
Alignment:
Q  76 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 175  Q
    |||||| ||||| || ||||||||||||  ||| ||||| || |||||||| | ||| |||||| ||||||||||||| ||| ||||||||||||| ||     
T  8382790 agcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcattgaaatatgca 8382691  T
Q  176 ggcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcata 275  Q
    ||||| ||||||||| ||| || || |||    ||||||||   |||||||||||  ||||||||| | || | |||||| |||||||| ||||| || |    
T  8382690 ggcacggtaacaactacattctcgataggtgactccaaaaaattctctgcaatctcacgcatctttttgaggaccatagaggagatttcctcggcacaaa 8382591  T
Q  276 ggtgtttctcct 287  Q
    ||||||| ||||    
T  8382590 ggtgtttttcct 8382579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 6789766 - 6789884
Alignment:
Q  76 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 175  Q
    ||||||||| || ||||||||||||||    |||||||| ||||||||||| | ||| |||||||  ||||||||||| ||| ||||||||||||||||     
T  6789766 agcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgagaatcattgaaataagca 6789865  T
Q  176 ggcacagtaacaactgcat 194  Q
    |||||||||| ||||||||    
T  6789866 ggcacagtaataactgcat 6789884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 270
Target Start/End: Complemental strand, 13333366 - 13333176
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||| ||||||||||||||    || | ||| || |||||||||| ||| |||||||| ||||| || |||||| |||||||||| ||||||||||    
T  13333366 gcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggca 13333267  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggc 270  Q
    |||||||||| |||| |||||| ||     ||| | |||||||||||| ||  ||||||||||| || | ||||||||| ||||| |||||    
T  13333266 cagtaacaacggcattcttgactggtgaccccatatatgcctctgcaacctctcgcatctttgtaaggaccatagatgatatttcctcggc 13333176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 267
Target Start/End: Original strand, 8570572 - 8570756
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    ||||| |||||||||||||||  ||| ||||| |||||||||||   |||||||||| | |||||| | || ||  ||||||| |||||||| || ||||    
T  8570572 gcagtcggttcattgattatccgcattacattgagaccagcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacag 8570671  T
Q  183 taacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttc 267  Q
    |||  ||||||| ||| |||||    ||||||||||| ||||||||||  ||||||||||  ||||||| |||||| ||||||||    
T  8570672 taatcactgcattcttaacaggagactccaaaaatgcttctgcaatctctcgcatctttgagagaatcacagatgatatttcttc 8570756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 77 - 264
Target Start/End: Complemental strand, 29577582 - 29577395
Alignment:
Q  77 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccg 176  Q
    ||||||||||| |||||||||||||||  ||| ||||| || ||||||||| | || |||||| | |||||||| |||||| |||||||||||||||| |    
T  29577582 gcagcagcagttggttcattgattatccgcattacattgaggccagcaataatgccggcatctttggtggcttttcgctgagaatcattgaaataagctg 29577483  T
Q  177 gcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttc 264  Q
    |||| || |  ||||||| ||| || || |  |||||||||  |||||||||||   |||||||||  || |||||||| || |||||    
T  29577482 gcactgtgatcactgcattctttacgggtaactccaaaaatttctctgcaatctcctgcatctttgagaggatcatagacgatatttc 29577395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 264
Target Start/End: Original strand, 8590894 - 8591080
Alignment:
Q  78 cagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccgg 177  Q
    |||| ||||| |||||||| ||||||  ||| |||||||  ||||||||   ||| |||||| | || ||||||| |||| ||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  178 cacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttc 264  Q
    ||||||||||||||||| |||||||||    ||||||||    || |||||||  ||||||||||| |||| ||| |||||||||||    
T  8590994 cacagtaacaactgcattcttgacaggtgactccaaaaacttttcagcaatctctcgcatctttgtgagaaccatggatgagatttc 8591080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 267
Target Start/End: Original strand, 8581961 - 8582145
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    ||||| |||||||||||||||  ||| ||||| ||||| |||||   |||||||||| | |||||| | || ||  ||||||| |||||||| || ||||    
T  8581961 gcagtcggttcattgattatccgcattacattgagacctgcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacag 8582060  T
Q  183 taacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttc 267  Q
    |||  ||||||| ||| |||||    ||||||||||||||||||||||  ||||||| ||| ||||| | |||||| ||||||||    
T  8582061 taatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgtcagaataacagatgatatttcttc 8582145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 80 - 264
Target Start/End: Complemental strand, 8636253 - 8636069
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||| |||||||||||||||   || ||||| || || ||||| | ||| |||||| | |||| ||| |||||| |||||||||||||||| ||||    
T  8636253 gcagcagttggttcattgattatccgaattacattaaggccggcaatggcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggca 8636154  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttc 264  Q
    ||||||  ||||||| ||||||||    ||||| | ||||||| |||||||  ||||||||||| || | |||||| || |||||    
T  8636153 cagtaatgactgcattcttgacagatgattccagatatgcctcagcaatctctcgcatctttgtcaggaccatagacgatatttc 8636069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 8647131 - 8647259
Alignment:
Q  76 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 175  Q
    ||||||||| || |||||||||||||||   || | ||| || |||||||| |  || |||||||| |||||||| ||||||||||||||||| || ||     
T  8647131 agcagcagctgttggttcattgattatccggatgatattaaggccagcaatggccccggcatctatagtggcttttcgctgataatcattgaagtatgca 8647230  T
Q  176 ggcacagtaacaactgcatgcttgacagg 204  Q
    ||||||||||||||||||| ||| |||||    
T  8647231 ggcacagtaacaactgcattctttacagg 8647259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 194
Target Start/End: Original strand, 1301689 - 1301836
Alignment:
Q  48 ttcttttgtccaatccataagcaatagcagcagcagcag-tgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtgg 146  Q
    |||| ||||| || ||||| |||||||| ||||||| || | |||||||| |||||||  || ||||| || |||||||| | ||| |||||||| ||||    
T  1301689 ttctcttgtcaaaaccatacgcaatagctgcagcagtagctaggttcattaattatctgaatgacattaaggccagcaattgcaccggcatctatggtgg 1301788  T
Q  147 ctttccgctgataatcattgaaataagccggcacagtaacaactgcat 194  Q
    |||| |||||| ||||||||||||  || |||||||||||||| ||||    
T  1301789 cttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcat 1301836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 355
Target Start/End: Complemental strand, 8671540 - 8671265
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||| |||||||||||||||   || ||||| || |||||||||||||| ||||| || |||||  | |||||| |||||||||| ||||| ||||    
T  8671540 gcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatcaatggtggccgttcgctgagaatcattgaagtaagctggca 8671441  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtg 279  Q
    | |||||||| |||| |||||| ||    |||| | ||||||| |||| ||  ||||||||||| || | |||||| || ||||| || || || |  ||    
T  8671440 cggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaattg 8671341  T
Q  280 tttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaac 355  Q
     |||||  | || |||||| | |||| |||||| || ||| |||| |  || ||||| ||||||||||||||||||    
T  8671340 cttctctagaccttcgtacttgacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaac 8671265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 355
Target Start/End: Complemental strand, 10494284 - 10494009
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||| |||||||||||||||   || ||||| || |||||||||| ||| ||||| || || || || || ||| |||| ||||| ||||||||||    
T  10494284 gcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggca 10494185  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtg 279  Q
    |||||||||| |||| |||||| ||     ||||| |||||||||||| ||  ||||||||| | || | ||||||||| ||||| ||||| || | |||    
T  10494184 cagtaacaacagcattcttgactggtgaccccaaatatgcctctgcaacctctcgcatctttataaggaccatagatgatatttcctcggcacaaaagtg 10494085  T
Q  280 tttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaac 355  Q
     ||||| || |||| |||| |  | | |||||| || ||| |||| |  || ||| | ||||||||||||||||||    
T  10494084 cttctcttgacccttgtacttagcggtaatcataggtttgtcattgacacctgaagtaaccttgaatggccacaac 10494009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 76 - 270
Target Start/End: Original strand, 8559587 - 8559781
Alignment:
Q  76 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 175  Q
    |||||| ||||| |||||||||||||||| ||| ||||| |||||||||||   |||||||||| | |||||| | |  ||| ||||||| ||||||||     
T  8559587 agcagctgcagttggttcattgattatctgcattacattaagaccagcaatttcacctgcatctttggtggctcttctttgagaatcattaaaataagca 8559686  T
Q  176 ggcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggc 270  Q
    || || ||||  || |||| ||  || | |   ||||||||||| ||||||||||  ||||||| ||| |||||||||| ||| |||||||||||    
T  8559687 ggtacggtaatcacagcattctcaaccgtcgactccaaaaatgcttctgcaatctctcgcatctgtgtgagaatcatagctgatatttcttcggc 8559781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 17260499 - 17260604
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||| | |||||||| |||| ||||| |||||  || |||||||||  ||| |||||||| |||||||| |||||| |||||||||||||||| || |    
T  17260499 gcagcaataggttcattaattaacttcaaaacataaaggccagcaataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaa 17260598  T
Q  180 cagtaa 185  Q
    ||||||    
T  17260599 cagtaa 17260604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 17268197 - 17268302
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||| ||||||||||||| |||||  ||||| || ||||||||   ||| |||||||| |||||||| |||||| |||| ||||| |||||||| |    
T  17268197 gcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaatcgttgaagtaagccggga 17268296  T
Q  180 cagtaa 185  Q
    ||||||    
T  17268297 cagtaa 17268302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 267
Target Start/End: Original strand, 8545893 - 8546077
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    ||||| |||||||||||||||  ||| ||||| ||||| |||||   |||||||||| |||||| | |  | ||  ||||||| |||||||| || ||||    
T  8545893 gcagtcggttcattgattatccgcatgacatttagaccggcaatttcacctgcatcttttgtggatctttgttgtgaatcattaaaataagcaggtacag 8545992  T
Q  183 taacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttc 267  Q
    |||  ||||||| ||| |||||    ||||||||||||||||||||||  ||||||| ||  || |||| |||||| ||||||||    
T  8545993 taatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttc 8546077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 8640403 - 8640343
Alignment:
Q  134 gcatctattgtggctttccgctgataatcattgaaataagccggcacagtaacaactgcat 194  Q
    |||||||| ||||||||  |||||||||||||||| ||||| |||| ||||||||||||||    
T  8640403 gcatctatggtggctttttgctgataatcattgaagtaagcaggcatagtaacaactgcat 8640343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 8610229 - 8610278
Alignment:
Q  134 gcatctattgtggctttccgctgataatcattgaaataagccggcacagt 183  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||||||||    
T  8610229 gcatcttttgtggctttccgctgagaatcattaaaataagcaggcacagt 8610278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 8538290 - 8538418
Alignment:
Q  76 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 175  Q
    ||||||||| || |||||||||||||||  ||| ||||| || ||||||||   ||| |||||| | |||||| | |||||  ||||||||||||||||     
T  8538290 agcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattgaaataagca 8538389  T
Q  176 ggcacagtaacaactgcatgcttgacagg 204  Q
    || || ||||  |||||||  ||||||||    
T  8538390 ggtactgtaatcactgcatttttgacagg 8538418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 8654747 - 8654817
Alignment:
Q  119 ccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacagtaacaac 189  Q
    |||||||| | ||| |||||||| || ||||| |||||| | |||||||| || |||||||||||||||||    
T  8654747 ccagcaatggcaccagcatctatggttgcttttcgctgagagtcattgaagtatgccggcacagtaacaac 8654817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 288
Target Start/End: Complemental strand, 27830759 - 27830577
Alignment:
Q  106 cataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacagtaacaactgcatgcttgacaggc 205  Q
    ||||||||| || |||||||| | ||| | |||||  |||||||| || ||| | |||||||||||||| ||||| || |  ||||||| ||| || ||     
T  27830759 cataacattaaggccagcaatggcaccggaatctacagtggcttttcgttgagagtcattgaaataagctggcacggttattactgcattcttaaccggt 27830660  T
Q  206 atttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtgtttctcctg 288  Q
      || |||| ||||||| || ||||  ||||||||||| || | ||| ||||| ||||| || || |||| ||||||||||||    
T  27830659 gattgcaaatatgcctccgcgatctctcgcatctttgtaaggaccattgatgaaatttcctccgcacataagtgtttctcctg 27830577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 355
Target Start/End: Original strand, 28910841 - 28911115
Alignment:
Q  81 cagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcac 180  Q
    |||||||| | ||||||||||||  ||||||||| || |   |||| | ||| |||||||| |||||||||| || | |||||||||||||| | | ||     
T  28910841 cagcagtgagctcattgattatccgcataacattaagcctgacaatggcaccagcatctatggtggctttcctctaagaatcattgaaataaccagtcaa 28910940  T
Q  181 agtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtgt 280  Q
    |||||||| ||||| |||||| |||| ||||||||||| | ||||||||| ||| |||||||  |||| || |||||||||||| || || ||||  |      
T  28910941 agtaacaattgcattcttgacgggcaattccaaaaatgtcactgcaatctcgcgaatctttgagagaaccacagatgagatttcctcagcacataatttc 28911040  T
Q  281 ttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaac 355  Q
    ||||||||  ||| |||| | ||||| |||||||| ||| |||| |  |||| |||||||||||| ||| |||||    
T  28911041 ttctcctgatccttgtacttgacagatatcatggggttgtcattgacaccggcaatgaccttgaacggcgacaac 28911115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 288
Target Start/End: Complemental strand, 12245321 - 12245108
Alignment:
Q  75 cagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagc 174  Q
    |||| ||||||||||||||||| |||| | |||||||||| ||||||||||| |  || |||||||| || ||||| |||||| ||||| | ||||||||    
T  12245321 cagctgcagcagtgggttcattcattaccctcataacattgagaccagcaattgagccagcatctatcgttgcttttcgctgagaatcactaaaataagc 12245222  T
Q  175 cggcacagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcat 274  Q
     || ||||||||||| |||| ||| || ||   ||| ||| ||||||| ||||| |  |||||||||||||| | ||||||||| | |||||| || |||    
T  12245221 aggtacagtaacaacagcattctttaccggtgattctaaatatgcctcagcaatttctcgcatctttgttagtaccatagatgatacttcttcagcacat 12245122  T
Q  275 aggtgtttctcctg 288  Q
    || || ||||||||    
T  12245121 agctgcttctcctg 12245108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 264
Target Start/End: Complemental strand, 16657427 - 16657243
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||| ||||||||||| ||    || ||||| || ||||| || | ||| |||||||| |||||||| |||||  |||||||||| ||||| ||||    
T  16657427 gcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggca 16657328  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttc 264  Q
    |||||||||| |||| ||||||||||   |||| ||||||||| ||||  |  ||||||||||| || ||||||||||| |||||    
T  16657327 cagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttc 16657243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 12258491 - 12258328
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||| |||||||| | |||||||||||||||||| ||| ||||| ||||  ||||||| ||||||||||  ||  ||||| | ||||| || ||||    
T  12258491 gcagcagtaggttcatttaatatcttcataacattcaggccaacaatattacccacatctatagtggctttcctttgtgaatcactaaaatatgcaggca 12258392  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgt 243  Q
    ||||||||||||||| ||| || ||   ||| ||| ||||||| ||||| |  |||||||||||    
T  12258391 cagtaacaactgcattcttaacgggtgattctaaatatgcctcagcaatttctcgcatctttgt 12258328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 288
Target Start/End: Original strand, 11999652 - 11999860
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    ||||||||||||||||| |||| | | |||||||| |  |||||||| | ||| |||||||| |||||||| || ||| ||||| | |||||||| || |    
T  11999652 gcagcagtgggttcattcattacccttataacattgatgccagcaattgcaccggcatctatagtggcttttcgttgagaatcactaaaataagctggta 11999751  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtg 279  Q
    ||||||||||  ||| ||| || ||   ||| ||| ||||||| ||||| |  |||||||| ||||| | ||||||||| | |||||| || ||||| ||    
T  11999752 cagtaacaacaacattctttaccggtgattctaaatatgcctcagcaatttctcgcatcttcgttagtaccatagatgatacttcttcagcacatagctg 11999851  T
Q  280 tttctcctg 288  Q
     ||||||||    
T  11999852 cttctcctg 11999860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 355
Target Start/End: Original strand, 12234954 - 12235222
Alignment:
Q  87 tgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacagtaac 186  Q
    ||||||| || |||| | |||||||||| || ||||||||   ||| |||||||| || ||||| || ||| |||||||||||||||| ||||| |||||    
T  12234954 tgggttcgttcattaccctcataacattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaac 12235053  T
Q  187 aactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtgtttctcc 286  Q
    |||||||| ||| || || | ||  ||| ||||||| || || |  ||||||||||| || | ||||||||| | ||||||||  ||||| || |||||     
T  12235054 aactgcattcttaactggaaattgtaaatatgcctcagcgatttctcgcatctttgtgagtaccatagatgatacttcttcgggacatagctgcttctct 12235153  T
Q  287 tgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaac 355  Q
     | |||| |||| | |||  ||||||||| ||| |||| |  || | |  |||||||||||||||||||    
T  12235154 cgacccttgtacttgacaataatcatgggtttgtcattgacaccagcagcgaccttgaatggccacaac 12235222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 7542487 - 7542598
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    ||||| |||||||| |||  | |||||||||| || |||||||| | ||| |||||||| |||||||| || ||| ||||||| |||||||| || ||||    
T  7542487 gcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttttcgttgagaatcattaaaataagcaggtacag 7542586  T
Q  183 taacaactgcat 194  Q
    ||||||||||||    
T  7542587 taacaactgcat 7542598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 16661899 - 16661788
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    ||||||||||||||||||||| ||| ||| || || |||||||| | ||| ||||| || |||||||| |||||| |||| || |||||||| || ||||    
T  16661899 gcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcgttaaaataagcaggaacag 16661800  T
Q  183 taacaactgcat 194  Q
    | ||||||||||    
T  16661799 tgacaactgcat 16661788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 43625725 - 43625784
Alignment:
Q  135 catctattgtggctttccgctgataatcattgaaataagccggcacagtaacaactgcat 194  Q
    ||||||| |||||||| |||||| |||||||||| ||||| ||||| |||||||||||||    
T  43625725 catctatggtggcttttcgctgagaatcattgaagtaagcaggcacggtaacaactgcat 43625784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 14703666 - 14703789
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    ||||| || |||||||| |||| | |||||||||| || || ||||||  ||| ||||| || |||||||| |  ||| ||||| | |||||||| ||||    
T  14703666 gcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatccatagtggcttttctttgagaatcactaaaataagcaggca 14703765  T
Q  180 cagtaacaactgcatgcttgacag 203  Q
    | ||||||||||||| ||| ||||    
T  14703766 ccgtaacaactgcattcttaacag 14703789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 293
Target Start/End: Complemental strand, 34466703 - 34466490
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    ||||||||||||||||||||||| | || |||||| || |||||||||||||| ||||| |  || ||||| |||||| ||||||| |||||||| ||||    
T  34466703 gcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatccacagtagcttttcgctgagaatcattaaaataagcaggca 34466604  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtg 279  Q
    | || | |||||||| ||| |  ||   ||||||| || |||||||| | |  ||||||||||  || ||||||||||||||||| || || ||||||||    
T  34466603 cggtgataactgcattcttaattggtgattccaaatattcctctgcagtatcccgcatctttgaaaggatcatagatgagatttcctcagcacataggtg 34466504  T
Q  280 tttctcctgtccct 293  Q
     |||||||| ||||    
T  34466503 cttctcctgaccct 34466490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 15595308 - 15595413
Alignment:
Q  89 ggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacagtaacaa 188  Q
    ||||||||||||| |   |||||||| || |||||||| | |||||||||||| |||||||| || ||| ||||||||| |||||| ||||| |||||||    
T  15595308 ggttcattgattacccgtataacattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattgagataagcaggcacggtaacaa 15595407  T
Q  189 ctgcat 194  Q
    ||||||    
T  15595408 ctgcat 15595413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 4678464 - 4678359
Alignment:
Q  84 cagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacagt 183  Q
    |||| ||||| |||||||| |  || ||||| || |||||||| | ||| |||||||| || ||||| || ||| |||||||||| || || ||||||||    
T  4678464 cagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagt 4678365  T
Q  184 aacaac 189  Q
    ||||||    
T  4678364 aacaac 4678359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 355
Target Start/End: Complemental strand, 9335801 - 9335526
Alignment:
Q  80 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 179  Q
    |||||||| |||||||||||||||   || ||||| || |||||||||||||| |||||||| ||||| || |||||| |||||||||| ||||| ||||    
T  9335801 gcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggca 9335702  T
Q  180 cagtaacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtg 279  Q
    | |||||||| |||| |||||| |||    ||||| ||||||| |||| ||  | ||||||||| || | |||||| || ||||| || || || | |||    
T  9335701 cggtaacaacggcattcttgaccggcgaccccaaatatgcctccgcaacctctctcatctttgtaagcaacatagaagatatttcctcagcacaaaagtg 9335602  T
Q  280 tttctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaac 355  Q
     ||||| || |||| |||  | |||| |||||| || ||| |||| |  || ||||| ||||||||||||||||||    
T  9335601 cttctcttgacccttgtagttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaac 9335526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 35132709 - 35132829
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    ||||| |||||||| ||||   ||||||||||  |||||||||||| ||| |||||||| |||||||| || ||| ||||| | |||||||| |||||||    
T  35132709 gcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacag 35132808  T
Q  183 taacaactgcatgcttgacag 203  Q
    |||||||||||| ||| ||||    
T  35132809 taacaactgcattcttaacag 35132829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 355
Target Start/End: Original strand, 30775513 - 30775785
Alignment:
Q  83 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcacag 182  Q
    |||||||| ||||| |||||  |||||||||| ||||||||||| | ||| ||||| || |||||||| |||||   ||||||||||||||| |||||||    
T  30775513 gcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacag 30775612  T
Q  183 taacaactgcatgcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtgttt 282  Q
    | | ||||||||  || || ||   ||||||| |   |||||||||||  | ||| ||||| || |  || ||||| ||||| ||||| || ||| ||||    
T  30775613 tgataactgcatttttaactggggattccaaatacatctctgcaatctctctcatatttgtgaggactattgatgaaatttcctcggcacagaggagttt 30775712  T
Q  283 ctcctgtccctcgtacgttacagaaatcatgggcttgccatttattccggaaatgaccttgaatggccacaac 355  Q
    |||||| |||| | || | |  ||||||||||| ||| |||| |  || ||||  ||||||||||||||||||    
T  30775713 ctcctggcccttgaacttaagggaaatcatgggtttgtcattaacaccagaaacaaccttgaatggccacaac 30775785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 54396678 - 54396795
Alignment:
Q  77 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccg 176  Q
    ||||||||||| || ||||| || ||| |||  ||||||| ||| | ||||| ||| |||||| | || ||||  || ||| |||||||||||||||| |    
T  54396678 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 54396777  T
Q  177 gcacagtaacaactgcat 194  Q
    | ||||||||||| ||||    
T  54396778 gaacagtaacaacagcat 54396795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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