View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_18 (Length: 354)
Name: NF10176_low_18
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 195 - 337
Target Start/End: Original strand, 17174939 - 17175081
Alignment:
| Q |
195 |
aggcacgaagaaccgagaaatcaaagcgtttcttgtatggatcccaatgcattccgatttcatctcctttctttaaactccttcgaactacaaattcctt |
294 |
Q |
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| T |
17174939 |
aggcacgaagaaccgagaaatcaaaccgtttcttgtatggatcccaatgcattccgatttcatctcctttctttaaactccttcgaactacaaattcctt |
17175038 |
T |
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| Q |
295 |
gatccatgtctctttgaaaactgggcttttattggaaggtcgt |
337 |
Q |
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| T |
17175039 |
gatccatgtctctttgaaaactgggcttttattggaaggtcgt |
17175081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 17174777 - 17174904
Alignment:
| Q |
1 |
ctttatatattgtaatcagagtttaatacaaacaaatcaagaacctaagagggccatcaaatatgtgtaaagttaacaacatgaagacaacatatatcag |
100 |
Q |
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| T |
17174777 |
ctttatatattgtaatcagagtttaatacaaacaaatcaagaacctaagagggccatcaaatatgtgtaatgttaacaacatgaagacaacatatatcag |
17174876 |
T |
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| Q |
101 |
atgatattgttaaagtaaacaagacaat |
128 |
Q |
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| T |
17174877 |
atgatattgttaaagtaaacaagacaat |
17174904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 155 - 336
Target Start/End: Complemental strand, 11798928 - 11798754
Alignment:
| Q |
155 |
aaaactggaaactaatgttggtctctcacttgacgacgataggcacgaagaaccgagaaatcaaagcgtttcttgtatggatcccaatgcattccgattt |
254 |
Q |
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| T |
11798928 |
aaaactgaaaactaatgcttgtctgaaacttgatggcgataggcacgaagaaccgagaaatcgaaccgttgtttgta-------caatgcatgcaaattt |
11798836 |
T |
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| Q |
255 |
catctcctttctttaaactccttcgaactacaaattccttgatccatgtctctttgaaaactgggcttttattggaaggtcg |
336 |
Q |
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| T |
11798835 |
catctcctttcttcaagcctcttcgaagtacaaaatccttgatccatatctctttgaaaacagggccttgattcgaaggtcg |
11798754 |
T |
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