View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10176_low_20 (Length: 326)
Name: NF10176_low_20
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 159641 - 159948
Alignment:
| Q |
1 |
atgattagaaaatacgggagtaatgcccagccgacttaagatatcatcccaaaacattcacctacacatatttgagaagataatcacatcttttcctacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
159641 |
atgattagaaaatacgggagtaatgcccagccgacttaagatatcatcccaaaacattcacctacacatatttgagaagataatcacatcttttcctacc |
159740 |
T |
|
| Q |
101 |
tttcaaaacattcccaagataaatgagttcggtcgactcaacaagtgtacacccctaagtagaagagtgaagatgctcgtaaaattaattgcgtttagtg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
159741 |
ttccaaaacattcccaagataaatgagttcggtcgactcaacatgtgtacacccctaagtagaagagtgaagatgctcctaaaattcattgcgttaagtg |
159840 |
T |
|
| Q |
201 |
ggaaaaggtgtcatcgacttaggttcctaagataaatgagttcgttcgactcaactagtgtacacccctaactaaaatgtaatcaattggtacatacact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
159841 |
ggaaaaggtgtcatcgacttaggttcctaagataaatgagttcggtcgactcaactagtgtacacccctaactaaaatgtaatcaattggtacatacact |
159940 |
T |
|
| Q |
301 |
acacaaat |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
159941 |
acacaaat |
159948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 166 - 296
Target Start/End: Original strand, 151370 - 151499
Alignment:
| Q |
166 |
agtgaagatgctcgtaaaattaattgcgtttagtgggaaaaggtgtcatcgacttaggttcctaagataaatgagttcgttcgactcaactagtgtacac |
265 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
151370 |
agtgaagatactcgtaaaattcattgcgttaagtga-aaaaggagtcatcgacttgggttcctaagataaatgagttcggacgactcgactagtgtacac |
151468 |
T |
|
| Q |
266 |
ccctaactaaaatgtaatcaattggtacata |
296 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |
|
|
| T |
151469 |
ccctaactaaaacgtaatcaatcggtacata |
151499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 151227 - 151322
Alignment:
| Q |
1 |
atgattagaaaatacgggagtaatgcccagccgacttaagatatcatcccaaaacattcacctacacatatttgagaagataatcacatcttttcc |
96 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||| |||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
151227 |
atgattagaaaatatgggagtaatgcccagccgacctaagatatcaccccataacattcacttacaaataattgagaagataatcacatcctttcc |
151322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 151427 - 151474
Alignment:
| Q |
111 |
ttcccaagataaatgagttcggtcgactcaacaagtgtacacccctaa |
158 |
Q |
| |
|
|||| ||||||||||||||||| |||||| || ||||||||||||||| |
|
|
| T |
151427 |
ttcctaagataaatgagttcggacgactcgactagtgtacacccctaa |
151474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University