View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_21 (Length: 320)
Name: NF10176_low_21
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 47081286 - 47080985
Alignment:
| Q |
1 |
tggtccagttacatgcgtagttgttgttgatagtcaaacaaaagtaaaacatgcacatgataaattgacaatactagaaagaatgcaacattgtatagtg |
100 |
Q |
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| T |
47081286 |
tggtccagttacatgcgtagttgttgttgatagtcaaacaaaagtaaaacatgcacatgataaattgacaatactagaaagaatgcaacattgtatagtg |
47081187 |
T |
|
| Q |
101 |
atagtgcacacccaacacaactacaaacaagacagcaaatagtgttgttattggagtttaactggcagtggctaaacagtactagaaatagattttgaat |
200 |
Q |
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| T |
47081186 |
atagtgcacacccaacacaactacaaacaagacagcaaatagtgttgttattggattttaactggcagtggctaaacagtactagaaatagattttgaat |
47081087 |
T |
|
| Q |
201 |
tgtgtttatttaccttccacaagtatgcaaaaagtgatggagggtctatcacaaatgctttgcttaaccgtcctggatagtactcacccacaattttcaa |
300 |
Q |
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| T |
47081086 |
tgtgtttatttaccttccacaagtatgcaaaaagtgatggagggtctatcacaaatgctttgcttaaccgtcctggatagtactcacccacaattttcaa |
47080987 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
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|| |
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| T |
47080986 |
tg |
47080985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 7516264 - 7516234
Alignment:
| Q |
193 |
ttttgaattgtgtttatttaccttccacaag |
223 |
Q |
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| T |
7516264 |
ttttgaattgtgtttatttaccttccacaag |
7516234 |
T |
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