View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10176_low_24 (Length: 312)

Name: NF10176_low_24
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10176_low_24
NF10176_low_24
[»] chr5 (39 HSPs)
chr5 (1-308)||(21518837-21519144)
chr5 (28-307)||(19475684-19475963)
chr5 (13-307)||(23404129-23404423)
chr5 (28-212)||(24928356-24928540)
chr5 (28-307)||(20560080-20560359)
chr5 (7-164)||(22155062-22155210)
chr5 (83-164)||(37732180-37732261)
chr5 (1-164)||(40398914-40399068)
chr5 (83-164)||(14449251-14449332)
chr5 (83-164)||(15767320-15767401)
chr5 (83-164)||(17727486-17727567)
chr5 (83-164)||(27044452-27044533)
chr5 (7-164)||(31841960-31842108)
chr5 (1-164)||(27605577-27605731)
chr5 (7-188)||(20788520-20788689)
chr5 (130-308)||(34060285-34060463)
chr5 (83-164)||(35224039-35224120)
chr5 (83-164)||(36696262-36696343)
chr5 (83-158)||(17615635-17615710)
chr5 (83-158)||(31357109-31357184)
chr5 (28-308)||(17448965-17449242)
chr5 (83-187)||(5292780-5292884)
chr5 (130-307)||(1113610-1113787)
chr5 (83-164)||(9344517-9344598)
chr5 (83-164)||(23370498-23370579)
chr5 (83-164)||(36584733-36584814)
chr5 (10-164)||(31446410-31446564)
chr5 (83-164)||(14038604-14038685)
chr5 (83-164)||(14560265-14560346)
chr5 (83-164)||(22684010-22684091)
chr5 (83-164)||(23304841-23304922)
chr5 (83-164)||(23705348-23705429)
chr5 (83-164)||(24575635-24575716)
chr5 (83-164)||(24590279-24590360)
chr5 (83-164)||(24819093-24819174)
chr5 (83-164)||(27468724-27468805)
chr5 (83-164)||(39493103-39493184)
chr5 (83-164)||(42051348-42051429)
chr5 (1-29)||(20560349-20560377)
[»] chr2 (21 HSPs)
chr2 (1-308)||(24423087-24423385)
chr2 (28-307)||(21129248-21129527)
chr2 (28-212)||(28729612-28729796)
chr2 (13-307)||(21170056-21170350)
chr2 (28-305)||(20415238-20415503)
chr2 (10-164)||(24336198-24336343)
chr2 (28-180)||(26869449-26869595)
chr2 (24-164)||(22958158-22958298)
chr2 (48-187)||(43084947-43085086)
chr2 (1-187)||(29246446-29246623)
chr2 (49-158)||(4212151-4212260)
chr2 (83-164)||(9906015-9906096)
chr2 (83-164)||(27223702-27223783)
chr2 (83-164)||(35255279-35255360)
chr2 (83-164)||(35265888-35265969)
chr2 (83-164)||(40224585-40224666)
chr2 (94-164)||(43347680-43347750)
chr2 (83-164)||(10269258-10269339)
chr2 (83-164)||(11403474-11403555)
chr2 (28-74)||(28377607-28377653)
chr2 (83-156)||(39178563-39178636)
[»] chr3 (36 HSPs)
chr3 (1-307)||(9388808-9389120)
chr3 (19-302)||(11214262-11214545)
chr3 (28-307)||(15191706-15191985)
chr3 (28-212)||(17907771-17907954)
chr3 (28-212)||(7802258-7802442)
chr3 (28-307)||(29469438-29469717)
chr3 (1-164)||(19780676-19780830)
chr3 (28-308)||(14255498-14255775)
chr3 (7-164)||(20681620-20681768)
chr3 (83-164)||(8777004-8777085)
chr3 (7-164)||(13123965-13124113)
chr3 (7-164)||(14467891-14468039)
chr3 (83-164)||(18486337-18486418)
chr3 (83-164)||(28322677-28322758)
chr3 (83-164)||(38197086-38197167)
chr3 (83-164)||(39374401-39374482)
chr3 (49-164)||(6218481-6218596)
chr3 (83-164)||(11280839-11280920)
chr3 (1-158)||(37868717-37868865)
chr3 (1-158)||(37877235-37877383)
chr3 (28-308)||(4406653-4406930)
chr3 (83-164)||(5512982-5513063)
chr3 (83-164)||(5545460-5545541)
chr3 (83-164)||(16427597-16427678)
chr3 (83-164)||(5874140-5874221)
chr3 (83-164)||(12294629-12294710)
chr3 (83-164)||(24391949-24392030)
chr3 (83-164)||(41685980-41686061)
chr3 (10-164)||(16389318-16389472)
chr3 (85-164)||(24662188-24662267)
chr3 (94-164)||(5625822-5625892)
chr3 (130-179)||(1792233-1792282)
chr3 (83-164)||(4746035-4746116)
chr3 (194-296)||(9004053-9004155)
chr3 (194-278)||(14583744-14583828)
chr3 (7-43)||(28322789-28322825)
[»] scaffold0133 (2 HSPs)
scaffold0133 (28-307)||(40580-40859)
scaffold0133 (83-164)||(33426-33507)
[»] chr7 (23 HSPs)
chr7 (28-212)||(9162020-9162204)
chr7 (28-233)||(15886080-15886285)
chr7 (28-293)||(10560466-10560731)
chr7 (28-214)||(21000849-21001035)
chr7 (83-164)||(2714143-2714224)
chr7 (28-308)||(25209384-25209649)
chr7 (48-187)||(5687802-5687941)
chr7 (1-164)||(6875743-6875897)
chr7 (50-164)||(4214290-4214404)
chr7 (7-164)||(169136-169284)
chr7 (83-164)||(1989864-1989945)
chr7 (83-164)||(8010593-8010674)
chr7 (83-164)||(11007483-11007564)
chr7 (49-164)||(8619637-8619752)
chr7 (49-164)||(17958626-17958741)
chr7 (83-164)||(9087526-9087607)
chr7 (83-164)||(42868157-42868238)
chr7 (83-187)||(9435568-9435672)
chr7 (83-164)||(26694271-26694352)
chr7 (83-164)||(24737022-24737103)
chr7 (83-164)||(26398626-26398707)
chr7 (83-164)||(40050634-40050715)
chr7 (112-164)||(22091480-22091532)
[»] chr8 (19 HSPs)
chr8 (28-307)||(19420672-19420951)
chr8 (28-293)||(30322969-30323235)
chr8 (115-308)||(23467572-23467765)
chr8 (28-233)||(19227255-19227460)
chr8 (1-164)||(26113545-26113699)
chr8 (7-164)||(32086161-32086309)
chr8 (83-164)||(36295234-36295315)
chr8 (49-164)||(6153359-6153474)
chr8 (48-187)||(19131020-19131159)
chr8 (83-164)||(13686453-13686534)
chr8 (83-164)||(36080254-36080335)
chr8 (83-164)||(244120-244201)
chr8 (83-164)||(797490-797571)
chr8 (83-164)||(3357109-3357190)
chr8 (83-164)||(9343409-9343490)
chr8 (83-164)||(44483431-44483512)
chr8 (256-307)||(25682244-25682295)
chr8 (83-164)||(29079021-29079102)
chr8 (1-29)||(19420654-19420682)
[»] chr6 (24 HSPs)
chr6 (13-310)||(12360375-12360672)
chr6 (28-212)||(20038198-20038382)
chr6 (1-307)||(25796106-25796418)
chr6 (28-307)||(9120765-9121044)
chr6 (83-164)||(26867068-26867149)
chr6 (7-164)||(34815595-34815743)
chr6 (83-164)||(12725293-12725374)
chr6 (83-164)||(27344012-27344093)
chr6 (83-164)||(27404752-27404833)
chr6 (83-164)||(4633195-4633276)
chr6 (83-164)||(16932667-16932748)
chr6 (83-164)||(32309501-32309582)
chr6 (130-305)||(18923647-18923822)
chr6 (49-187)||(12857170-12857308)
chr6 (83-164)||(3663677-3663758)
chr6 (83-164)||(25789986-25790067)
chr6 (83-164)||(26027677-26027758)
chr6 (195-307)||(25733091-25733203)
chr6 (7-125)||(27375003-27375121)
chr6 (7-125)||(27465360-27465478)
chr6 (112-164)||(32970378-32970430)
chr6 (194-307)||(13915637-13915750)
chr6 (1-29)||(9121034-9121062)
chr6 (7-43)||(32970475-32970511)
[»] scaffold0474 (1 HSPs)
scaffold0474 (28-307)||(3119-3398)
[»] chr1 (19 HSPs)
chr1 (28-211)||(26562761-26562944)
chr1 (24-212)||(23157658-23157846)
chr1 (18-212)||(7681550-7681729)
chr1 (28-307)||(151936-152215)
chr1 (10-164)||(5648179-5648324)
chr1 (1-164)||(4169499-4169653)
chr1 (48-187)||(19181147-19181286)
chr1 (49-164)||(21865899-21866014)
chr1 (83-164)||(35398998-35399079)
chr1 (83-164)||(38097344-38097425)
chr1 (83-164)||(3173863-3173944)
chr1 (83-164)||(5835488-5835569)
chr1 (83-164)||(35646523-35646604)
chr1 (83-164)||(47616392-47616473)
chr1 (83-164)||(7509531-7509612)
chr1 (83-164)||(36244916-36244997)
chr1 (83-164)||(51654360-51654441)
chr1 (130-172)||(21163508-21163550)
chr1 (112-164)||(12621623-12621675)
[»] scaffold0398 (4 HSPs)
scaffold0398 (10-233)||(2043-2266)
scaffold0398 (10-233)||(10298-10521)
scaffold0398 (269-308)||(1980-2019)
scaffold0398 (269-308)||(10235-10274)
[»] scaffold1638 (1 HSPs)
scaffold1638 (40-188)||(273-421)
[»] scaffold0194 (1 HSPs)
scaffold0194 (28-233)||(1969-2174)
[»] scaffold1002 (1 HSPs)
scaffold1002 (16-308)||(1910-2202)
[»] scaffold1465 (1 HSPs)
scaffold1465 (159-308)||(1-150)
[»] scaffold2119 (1 HSPs)
scaffold2119 (10-187)||(103-280)
[»] scaffold0251 (1 HSPs)
scaffold0251 (28-293)||(24828-25093)
[»] scaffold0099 (1 HSPs)
scaffold0099 (28-158)||(14593-14728)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-187)||(51379-51556)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-305)||(194344-194633)
[»] chr4 (18 HSPs)
chr4 (24-164)||(17920380-17920520)
chr4 (24-164)||(19952813-19952953)
chr4 (24-164)||(24025902-24026042)
chr4 (48-187)||(40468388-40468527)
chr4 (28-308)||(15204944-15205218)
chr4 (1-164)||(27190156-27190310)
chr4 (7-164)||(16258146-16258294)
chr4 (83-164)||(24642652-24642733)
chr4 (83-164)||(49509864-49509945)
chr4 (83-164)||(55753683-55753764)
chr4 (83-164)||(27658943-27659024)
chr4 (130-180)||(3375336-3375386)
chr4 (130-308)||(16307658-16307836)
chr4 (130-305)||(19573466-19573641)
chr4 (83-164)||(10749041-10749122)
chr4 (83-164)||(10962810-10962891)
chr4 (83-164)||(36020621-36020702)
chr4 (28-74)||(16307559-16307605)
[»] scaffold0272 (2 HSPs)
scaffold0272 (28-308)||(21616-21878)
scaffold0272 (28-308)||(16529-16791)
[»] scaffold0199 (1 HSPs)
scaffold0199 (83-164)||(20692-20773)
[»] scaffold0105 (1 HSPs)
scaffold0105 (83-164)||(45434-45515)
[»] scaffold0454 (1 HSPs)
scaffold0454 (83-165)||(3605-3687)
[»] scaffold0085 (2 HSPs)
scaffold0085 (130-233)||(56247-56350)
scaffold0085 (28-118)||(56166-56256)
[»] scaffold1362 (1 HSPs)
scaffold1362 (130-308)||(1762-1940)
[»] scaffold0201 (1 HSPs)
scaffold0201 (194-307)||(913-1026)
[»] scaffold0747 (1 HSPs)
scaffold0747 (7-125)||(4594-4712)
[»] scaffold1216 (1 HSPs)
scaffold1216 (83-164)||(1453-1534)
[»] scaffold0485 (1 HSPs)
scaffold0485 (28-73)||(1-46)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 21519144 - 21518837
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||    
T  21519144 gattcagtggaggatgatgaggttgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagttcctgaagaatgtactt 21519045  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttc 200  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  21519044 ctggatgagctgcttctgaagctttagaagctggttctgatgaagtagctcctaaagcatgctttcctttcaaagcttgtgaaagcaacttgactccttc 21518945  T
Q  201 cttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctt 300  Q
    |||||||||||||||| ||| ||||||||||   |||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21518944 cttgacagtttcctctactatctcagaagccggagtagcaattacagctgctttctcaggatcaagctcatatcctgcagccttgagttgttcatccctt 21518845  T
Q  301 tgcttctc 308  Q
    ||||||||    
T  21518844 tgcttctc 21518837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 19475963 - 19475684
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |    
T  19475963 gagggtgaagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctgaatgaactgcttctgaagctttgg 19475864  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||||||||||||| |||||||| ||||     
T  19475863 aagctggttctgaagaagtagctcctgaagcatgctttcctttcaaagcttgtgataacaatgctactccttccttgacagtttcttcttctaattcagc 19475764  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    ||| || |||||||| | |  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  19475763 agctaaagtagcaattacaactgctttctcaggatcaagctcataacctgcagccttgagttgttcatccctttgcttct 19475684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 23404423 - 23404129
Alignment:
Q  13 gatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23404423 gatgatgagggtgaagagggtggaaatggaaggtcaggaatctgaatattgatcttagcttttgaggaagtacctgatgaatgagcttctggatgagctg 23404324  T
Q  113 cttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||||||||| ||    
T  23404323 cttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgataacaatgctactccttccttgacagtctc 23404224  T
Q  213 ctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
     | ||||||||||| ||| || ||||| ||   |   || || |||||| | |||||||| |||||||||||||||||||| |||||||| ||||    
T  23404223 ttgttctaactcagcagctaaagtagccatctcaacagccttttcaggagcaagctcataccctgcagccttgagttgttcctccctttgattct 23404129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 24928356 - 24928540
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||| | | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24928356 gagggtgaagatggaaggtcaggaatctgagtattgatattagcttgtaaagaagtacctgaagagtgagcttctggatgagctgcttctggagctttag 24928455  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||  || ||||| | || |||||||||    
T  24928456 atgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagatagcagttttactcccttctggacagtttc 24928540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 20560359 - 20560080
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||||||| | |||||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  20560359 gagggtgaagatggaaggtcaggaatctgagtattgacattagcttttaaagaagtacctgaagagtgagcttctggataagctgcttctggatctttag 20560260  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||| ||  || ||||| |||| ||||||||| | ||| | |||||     
T  20560259 atgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagataacagttttactccctcctggacagtttctttttcaacctcagc 20560160  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||||| | |||||    ||  || ||||||||| | |||| ||| |||||| ||||||||||||| || |||| |||||    
T  20560159 agccaaagcagcaaactcagcagccttctcaggagcaagcttataccctgcaaccttgagttgttcctctcttttcttct 20560080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 22155210 - 22155062
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  22155210 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggat 22155120  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  22155119 gaactgcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 22155062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 37732180 - 37732261
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||||||| |||||    
T  37732180 tacctgaagactgagcttctggatgaactgcttctggagcttctgatgctggttctgatgaagttgctcctgaagcttgctt 37732261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 40399068 - 40398914
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  40399068 gattcagttgatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagctt 40398978  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||| ||||||||||||| || ||  || ||||||||||||||||||||||||| |||||    
T  40398977 ctggatgaactgcttctggagcatttgaaacttgttctgatgaagtagctcctgaagcttgctt 40398914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 14449251 - 14449332
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  14449251 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 14449332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 15767401 - 15767320
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  15767401 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 15767320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 17727567 - 17727486
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  17727567 tacctgaagactgagcttctggatgaactgcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 17727486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 27044452 - 27044533
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  27044452 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 27044533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 31842108 - 31841960
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  31842108 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggat 31842018  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  | |||||||||||||| ||||||||||| |||||    
T  31842017 gaactgcttctggagcttttgaaacaggttctgatgaagttgctcctgaagcttgctt 31841960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 27605577 - 27605731
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  27605577 gattcagttgatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatatcagttttggatgaattacctgaagattgagctt 27605667  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||| |||||||||||||||| ||  | |||||||| ||||| ||||||||||| |||||    
T  27605668 ctggatgaactgcttctggagcttttgaaacaggttctgaagaagtggctcctgaagcttgctt 27605731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 20788689 - 20788520
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    |||||||||||||||||||||||||||||| ||        ||| |||||| ||| ||| | |||||| || ||| ||||| |||| |||||||||||||    
T  20788689 gtggatgatgatgagggtgaagagggtgga-at--------aggtatctgagtatagatatcagctttggatgaaatacctaaagagtgagcttctggat 20788599  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaa 188  Q
    |||||||||||||||| |||||||| |||||   ||| ||||||| ||| ||||||||    ||||| ||||||||||||||    
T  20788598 gagctgcttctggagccttagatgcaggttc---tgaggtagctcttgatgcatgcttgttcttcaaggcttgtgatagcaa 20788520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 34060463 - 34060285
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcagaag 229  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||||   || |||     ||||||||||||||||||| ||| ||| ||||| ||    
T  34060463 gctggttctgaagaagtagttcctgaagcattctttcctttcaaagcttgacttaacaaggctgctccttccttgacagtttcttctgctatctcagcag 34060364  T
Q  230 ccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    |||| | ||||||    |  |||||||||||| | | |||||| ||||| |||||||| |||||||| | |||||||||    
T  34060363 ccaatgaagcaatttctgcagctttctcaggagcaaactcataccctgctgccttgagctgttcatctcgttgcttctc 34060285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 35224120 - 35224039
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || | ||||||||||||||| ||||||||||| |||||    
T  35224120 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagttggttctgatgaagttgctcctgaagcttgctt 35224039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 36696343 - 36696262
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| ||||||||||||| |  || ||||||||||||||||| ||||||||||| |||||    
T  36696343 tacctgaagactgagcttctggatgaactgcttctggagcctctgaagctggttctgatgaagttgctcctgaagcttgctt 36696262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 17615710 - 17615635
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagc 158  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||  |||| ||||||||||| |||||||||||    
T  17615710 tacctgaagactgagcttctggatgaactgcttctggagcttttgaaactggatctgatgaagttgctcctgaagc 17615635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 31357184 - 31357109
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagc 158  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||  |||| ||||||||||| |||||||||||    
T  31357184 tacctgaagactgagcttctggatgaactgcttctggagcttttgaaactggatctgatgaagttgctcctgaagc 31357109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 17448965 - 17449242
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttt----tgaggaag--tacctgaagaatgagcttctggatgagctgcttctggag 121  Q
    |||||||  |||||||||||| |||||||| ||||||| ||||||||    |||| | |  |||||||||||||||||||||| ||||| ||||||| ||    
T  17448965 gagggtgaggatggaaggtcaagaatctgagtattgattttagctttaggttgagaaggaatacctgaagaatgagcttctggttgagcagcttctgaag 17449064  T
Q  122 ctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaa 221  Q
    ||         |||||||| ||||||||| ||||||  ||||||||||||   |||||   || ||  ||  |||||||| | |||||||||||||| |     
T  17449065 ct---------ggttctgaagaagtagcttctgaagtgtgctttcctttccgggcttgccttaacatatttgctccttccctaacagtttcctcttcaag 17449155  T
Q  222 ctcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
     |||| |||||||| ||||||    |   ||||||||||| | |||||||| ||||| |||||||| |||||||| |||||||||||    
T  17449156 ttcagcagccaaggaagcaatttctgcaactttctcaggagcaagctcataccctgctgccttgagctgttcatctctttgcttctc 17449242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 5292780 - 5292884
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtga 182  Q
    |||||||||| |||||||||||||||||||||||| ||||||| ||  | |||||||| ||||| || |||||||| |||||    ||||| ||||||||    
T  5292780 tacctgaagagtgagcttctggatgagctgcttcttgagcttttgaaacaggttctgaagaagtggcccctgaagcttgcttattcttcaaggcttgtga 5292879  T
Q  183 tagca 187  Q
    |||||    
T  5292880 tagca 5292884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 307
Target Start/End: Original strand, 1113610 - 1113787
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcagaag 229  Q
    ||||||||||| ||||||||| ||||||| |||||  ||||||||||||| || |||| ||| ||||| ||||  ||| |||||| ||| | ||||| ||    
T  1113610 gctggttctgaagaagtagcttctgaagcttgcttgtctttcaaagcttgagaaagcagcttcactccctcctgaacattttccttttcaacctcagcag 1113709  T
Q  230 ccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||| | |||||    ||  || ||||||||| | |||| ||| ||||||||||| |||||||| || |||| |||||    
T  1113710 ccaacgcagcaaactcagcagccttctcaggagctagcttataccctgcagccttaagttgttcctctcttttcttct 1113787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 9344598 - 9344517
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| | ||||||||| |||||    
T  9344598 tacctgaggactgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgttcctgaagcttgctt 9344517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 23370579 - 23370498
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| | ||||||||| |||||    
T  23370579 tacctgaggactgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgttcctgaagcttgctt 23370498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 36584733 - 36584814
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| | ||||||||| |||||    
T  36584733 tacctgaggactgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgttcctgaagcttgctt 36584814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 31446564 - 31446410
Alignment:
Q  10 gatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattatt-gatcttagcttttgaggaagtacctgaagaatgagcttctggatga 108  Q
    |||||||||||| ||||||| |||||||  ||||||  |||||||||| |||| |||   |||||| || ||| ||||||||||||||| ||||| ||||    
T  31446564 gatgatgatgagagtgaagaaggtggagtaggaagggtaggaatctgagtattagatgg-agctttagatgaattacctgaagaatgaggttctgaatga 31446466  T
Q  109 gctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    | ||||||| ||||||| |  |  || |||||||| || ||||||||||| |||||    
T  31446465 ggtgcttcttgagcttttgtagaaggatctgatgatgtggctcctgaagcttgctt 31446410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 14038685 - 14038604
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  14038685 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 14038604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 14560265 - 14560346
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  14560265 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 14560346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 22684091 - 22684010
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  22684091 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 22684010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 23304922 - 23304841
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  23304922 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 23304841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 23705429 - 23705348
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  |||||||||||| || ||  |||||||||||||||| | ||||||||| |||||    
T  23705429 tacctgaggactgagcttctggatgaattgcttctggagcctttgaaactggttctgatgaagttgttcctgaagcttgctt 23705348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 24575716 - 24575635
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  24575716 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 24575635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 24590279 - 24590360
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  24590279 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 24590360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 24819093 - 24819174
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  24819093 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 24819174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 27468805 - 27468724
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  27468805 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 27468724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 39493103 - 39493184
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  39493103 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 39493184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 42051429 - 42051348
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  |||||||||||| || ||  |||||||||||||||| | ||||||||| |||||    
T  42051429 tacctgaggactgagcttctggatgaattgcttctggagcctttgaaactggttctgatgaagttgttcctgaagcttgctt 42051348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 20560377 - 20560349
Alignment:
Q  1 gatttagtggatgatgatgagggtgaaga 29  Q
    |||||||||||||||||||||||||||||    
T  20560377 gatttagtggatgatgatgagggtgaaga 20560349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 24423385 - 24423087
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  24423385 gattcagtggaggatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagttcctgaagaatgtgctt 24423286  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttc 200  Q
    ||||||||||||||||         ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24423285 ctggatgagctgcttc---------agaagctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagaaacttgactccttc 24423195  T
Q  201 cttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctt 300  Q
     ||||||||||||||||||| |||||||||||  |||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24423194 tttgacagtttcctcttctatctcagaagccagagtagcaattacagctgctttctcaggatcaagctcatatcctgcagccttgagttgttcatccctt 24423095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 21129527 - 21129248
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||| ||| ||| ||||||  ||||||||| |||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  21129527 gagggtgaagatggaaggtcagtaatttgagtattgactttagcttttaaggaagtacctgaagagtgagcttctggatgatttgcttctggagctttag 21129428  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||| ||||||||| | ||| || ||||     
T  21129427 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgagataacaattttactccttcctggacagtttcttgttcaaattcagc 21129328  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    ||| || | |||||    ||  || |||| |||| | |||||||| |||||||||||||||||||| ||||||| |||||    
T  21129327 agctaaagcagcaaactcagcagccttcttaggagcaagctcataccctgcagccttgagttgttcctcccttttcttct 21129248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 28729796 - 28729612
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28729796 gagggtgaagatggaaggtcaggaatctgagtattgactttagcttttaaggaagtacctgaagagtgagcttctggatgagctgcttctggagctttag 28729697  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||| || |||||||||| |||||||||    
T  28729696 atgctggttctgatgaagtagctcctgaagcatgcttatctttcaaagcttgagataacaattttactccttcctggacagtttc 28729612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 21170350 - 21170056
Alignment:
Q  13 gatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctg 112  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||| ||||||  ||||||||| ||||||||||| |||||| | |||||||||||||||    
T  21170350 gatgatgagggtgaagagggtgaaattggaaggtctggaatctgagtattgactttagcttttaaggaagtacctcaagaattaccttctggatgagctg 21170251  T
Q  113 cttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||     |||||||||||||||||||    
T  21170250 cttctgaagctttagaagttggttctgatgaagtagctcctgaagcatgcttatctttcaaagcttgtgataacaatgctgctccttccttgacagtttc 21170151  T
Q  213 ctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
     | ||| || |||| ||| || | ||| ||   ||  || || |||||| | |||||||| |||||||||||||||||||| ||||||| |||||    
T  21170150 ttgttccaattcagcagctaaagcagccatctcagcagccttttcaggagcaagctcataccctgcagccttgagttgttcctcccttttcttct 21170056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 305
Target Start/End: Complemental strand, 20415503 - 20415238
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttg-aggaagtacctgaagaatgagcttctggatgagctgcttctggagcttta 126  Q
    ||||||| |||||||| ||| |||||||||  |||||   ||||||||| ||||| ||||||||||||||||||||||||||||         ||||||     
T  20415503 gagggtgaagatggaaagtctggaatctgaacattgactctagcttttgtaggaa-tacctgaagaatgagcttctggatgagc---------agctttt 20415414  T
Q  127 gatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcag 226  Q
    |||||||||||||  ||||   ||||||||| ||||||||||||||  ||||||  || ||      ||||||||||||||||||||||||| || ||||    
T  20415413 gatgctggttctggagaag---ctcctgaagtatgctttcctttcagggcttgtcttaacagggctgctccttccttgacagtttcctcttccaattcag 20415317  T
Q  227 aagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgctt 305  Q
     |||||  |  ||||||| || |||||||||| || | |||||||| ||||| ||||||||||||||||| ||||||||    
T  20415316 cagccagagaggcaataaaagctgctttctcaagagcaagctcataccctgctgccttgagttgttcatctctttgctt 20415238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 24336343 - 24336198
Alignment:
Q  10 gatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgag 109  Q
    |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||||     
T  24336343 gatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaa 24336253  T
Q  110 ctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||||||||| || ||  |||||||||||||||||||||||||||| |||||    
T  24336252 ctgcttctggagcatttgaaactggttctgatgaagtagctcctgaagcttgctt 24336198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 26869449 - 26869595
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||||| || |||||||||||||  |||||| ||||||||      |||||||||||| |||||||||||  |||| |||||||||||||| |    
T  26869449 gagggtgaagatgaaaagtcaggaatctgaacattgattttagcttt------agtacctgaagagtgagcttctggtcgagcagcttctggagcttttg 26869542  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgt 180  Q
    ||||||||||||| |  || ||| ||||||||||||| ||||||| |||||||    
T  26869543 atgctggttctgaaggtgttgcttctgaagcatgcttacctttcagagcttgt 26869595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 22958298 - 22958158
Alignment:
Q  24 tgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagct 123  Q
    ||||||||||| ||| || || |  ||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| ||||||||||||||    
T  22958298 tgaagagggtgaagagggtagatatggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagct 22958199  T
Q  124 ttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || ||  |||||||||||||||| ||||||||||| |||||    
T  22958198 tttgaaactggttctgatgaagttgctcctgaagcttgctt 22958158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 43084947 - 43085086
Alignment:
Q  48 aggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagta 147  Q
    |||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  | |||||||| ||||||    
T  43084947 aggaatctgagtatagatatcagttttggatgaaatacctgaagattgagcttctggatgaactgcttctggagcttttgaaacaggttctgaagaagta 43085046  T
Q  148 gctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    ||||||||||| |||||    ||||| |||||||||||||    
T  43085047 gctcctgaagcttgcttattcttcaaggcttgtgatagca 43085086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 29246446 - 29246623
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||||||| |||||||||||||||||||||||| |||          |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  29246446 gatttagttgatgatgatgagggtgaagagggtagagt---------aggaatctgagtatagatatcagttttggatgaaatacctgaagattgagctt 29246536  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    |||||||| |||||||||||||||| ||  | |||||||| ||||| ||||||||||| |||||    ||||| |||||||||||||    
T  29246537 ctggatgaactgcttctggagcttttgaaacaggttctgaagaagtggctcctgaagcttgcttattcttcaaggcttgtgatagca 29246623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 4212151 - 4212260
Alignment:
Q  49 ggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtag 148  Q
    ||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |    
T  4212151 ggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagcttttgaaactggttctgatgaagttg 4212250  T
Q  149 ctcctgaagc 158  Q
    ||||||||||    
T  4212251 ctcctgaagc 4212260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 9906096 - 9906015
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  9906096 tacctgaagattgagcttctggatgaactgcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 9906015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 27223702 - 27223783
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  27223702 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 27223783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 35255279 - 35255360
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  35255279 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 35255360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 35265888 - 35265969
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  35265888 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 35265969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 40224585 - 40224666
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||  | |||||||||||||| ||||||||||| |||||    
T  40224585 tacctgaagattgagcttctggatgagctgcttctggagcttttgaaacaggttctgatgaagttgctcctgaagcttgctt 40224666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 43347680 - 43347750
Alignment:
Q  94 tgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  43347680 tgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 43347750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 10269258 - 10269339
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  10269258 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 10269339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 11403555 - 11403474
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  11403555 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 11403474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 28377653 - 28377607
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttt 74  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  28377653 gagggtgaagatggaaggtcaggaatctgaatattgattttagcttt 28377607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 39178636 - 39178563
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaa 156  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| |||||||||    
T  39178636 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaa 39178563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 9389120 - 9388808
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagta------cctgaagaat 94  Q
    |||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||  |||||||||||| |||||      |||||||| |    
T  9389120 gattcagtggatgatgatgagagtgaagagggtgaagatgaaaggtcaggaatctgagtattgactttagcttttgagaaagtatgaatacctgaagatt 9389021  T
Q  95 gagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgac 194  Q
    || ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    ||    
T  9389020 gaccttctagatgagctgcttctgaagctttagaagctggttctgatgaagtagctcctgaagcatgcttatctttcaaagcttgtgatagcaatgctac 9388921  T
Q  195 tccttccttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttca 294  Q
    |||||||||||||||||| | |||||| |||| ||| || | |||||| | || ||||||||||||  | |||||||| ||||||||||||||||||||     
T  9388920 tccttccttgacagtttcttgttctaattcagcagctaaagaagcaattacagctgctttctcaggggcaagctcataccctgcagccttgagttgttcc 9388821  T
Q  295 tccctttgcttct 307  Q
    |||||||||||||    
T  9388820 tccctttgcttct 9388808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 11214545 - 11214262
Alignment:
Q  19 gagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctg 118  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||||  |||||||| || |   ||||||||||||||||||||||||||||||||||||    
T  11214545 gaggatgatgagggtggagatggaaggtcaggaatctgagtattgactttagctttagaagggatacctgaagaatgagcttctggatgagctgcttctg 11214446  T
Q  119 gagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttc 218  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| || |||||||||||||||| |||||||||    
T  11214445 aagcttttgatgctggttctgatgaagtagctcctgaagcatgctttcctttcagggcttgtgataacaattttactccttccttgacagcttcctcttc 11214346  T
Q  219 taactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttg 302  Q
     || |||| ||  || ||||| || | ||  || ||||||||| | |||||||| || || |||||||| |||||||| |||||    
T  11214345 caattcagcagttaaagtagctatcacagcagccttctcaggagcaagctcatacccagctgccttgagctgttcatctctttg 11214262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 15191985 - 15191706
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  15191985 gagggtgaagatggaaggtcaggaatctgagtattgacattagcttttaaggaagtacctgaagagtgagcttctggatgagctgcttctgaagctttag 15191886  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||  || ||||| |||| ||||||||| | ||| |  ||||     
T  15191885 atgctggttctgatgaagtagctcctgaagcatgcttgtctttcaaagcttgagataacagttttactccatcctggacagtttctttttcaacttcagc 15191786  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    ||| || | |||||    ||  || ||||||||| | |||| ||| |||||||||||||||||||| ||||||| |||||    
T  15191785 agctaaagcagcaaactcagcagccttctcaggagcaagcttataccctgcagccttgagttgttcctcccttttcttct 15191706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 17907954 - 17907771
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||||||||||||| |||||||| ||||||| ||||||| | | |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  17907954 gagggtgaagatggaaggtcaagaatctgagtattgatattagcttgtaaagaagtacctgaagagtgagcttctggatgagctgcttctagagctttag 17907855  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    |||||||||||||||||||||||||| |||| |||||  ||||||||||||| |||||||  || ||||| |||| |||||||||    
T  17907854 atgctggttctgatgaagtagctcct-aagcctgcttgtctttcaaagcttgagatagcagttttactccctcctggacagtttc 17907771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 7802442 - 7802258
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| ||||| |||||||||||| ||||||| | ||||| | | |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  7802442 gagggtgaagaaggaagttcaggaatctgagtattgatatcagcttgtaaagaagtacctgaagtgtgagcttctggatgagctgcttctggagctttag 7802343  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
     |||||||||||||| ||||||||||||||| |||||  ||||||||||||| |||||||  || ||||  |||| |||||||||    
T  7802342 gtgctggttctgatggagtagctcctgaagcctgcttgtctttcaaagcttgagatagcagttttactctctcctggacagtttc 7802258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 29469717 - 29469438
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| ||||| |||||||||||| || |||| | || ||||   || ||||||||||| |||||||||||| |||||||||||| ||||||||    
T  29469717 gagggtgaagaaggaagatcaggaatctgagtactgatgtcagtttttagtgatgtacctgaagagtgagcttctggaagagctgcttctgaagctttag 29469618  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    | ||||||||||| ||||||||| ||||||| |||||  ||||||||||||| || ||||  || ||||| ||||  |||||||||| ||| | |||||     
T  29469617 aagctggttctgaagaagtagcttctgaagcttgcttgtctttcaaagcttgagaaagcagtttcactccctcctgaacagtttccttttcaacctcagc 29469518  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||||| | |||||    ||  || ||||||||| | |||| ||| ||||||||||| |||||||| || |||| |||||    
T  29469517 agccaacgcagcaaactcagcagccttctcaggagctagcttataccctgcagccttaagttgttcctctcttttcttct 29469438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19780676 - 19780830
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  19780676 gattcagttgatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagctt 19780766  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||| |||||||||||||||| ||  |||||||||||||||||||||||||||| |||||    
T  19780767 ctggatgaactgcttctggagcttttgaaactggttctgatgaagtagctcctgaagcttgctt 19780830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 308
Target Start/End: Complemental strand, 14255775 - 14255498
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttt----tgaggaag--tacctgaagaatgagcttctggatgagctgcttctggag 121  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||||||    |||| | |  |||||||||||||||||||||| ||||  ||||||| ||    
T  14255775 gagggtgaagatggaaggtcaggaatctgaatattgactttagctttaggttgagaaggaatacctgaagaatgagcttctggttgagtagcttctgaag 14255676  T
Q  122 ctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaa 221  Q
    ||         |||||||| |||||||||||||||||||||||||||||||||| ||||  || |||     ||||||||||||||||||| ||| | |     
T  14255675 ct---------ggttctgaagaagtagctcctgaagcatgctttcctttcaaagtttgtcttaacaaagctgctccttccttgacagtttcttctgcaat 14255585  T
Q  222 ctcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
     |||| ||| || | || |||    |  |||||||||||| | |||||||| ||||| |||||||| |||||||| |||||||||||    
T  14255584 ttcagcagctaatgaagaaatttctgcagctttctcaggagcaagctcataccctgctgccttgagctgttcatctctttgcttctc 14255498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 20681768 - 20681620
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  20681768 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggat 20681678  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  20681677 gaactgcttctggagcttttgagactggttctgatgaagttgctcctgaagcttgctt 20681620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 8777004 - 8777085
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  8777004 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 8777085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 13123965 - 13124113
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  13123965 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttcgatgaattacctgaagattgagcttctggat 13124055  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  | |||||||||||||| ||||||||||| |||||    
T  13124056 gaactgcttctggagcttttgaaacaggttctgatgaagttgctcctgaagcttgctt 13124113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 14467891 - 14468039
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  14467891 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaaatacctgaagattgagcttctggat 14467981  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  | |||||||||||||| ||||||||||| |||||    
T  14467982 gaactgcttctggagcttttgaaacaggttctgatgaagttgctcctgaagcttgctt 14468039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 18486337 - 18486418
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  |||||||||||||| ||||| ||||||||||| |||||    
T  18486337 tacctgaagactgagcttctggatgaactgcttctggagcttctgatgctggttctgaagaagttgctcctgaagcttgctt 18486418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 28322758 - 28322677
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  28322758 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 28322677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 38197086 - 38197167
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  38197086 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 38197167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 39374401 - 39374482
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  39374401 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 39374482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 6218596 - 6218481
Alignment:
Q  49 ggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtag 148  Q
    ||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |    
T  6218596 ggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagcttttgaaactggttctgatgaagtgg 6218497  T
Q  149 ctcctgaagcatgctt 164  Q
    ||| |||||| |||||    
T  6218496 ctcatgaagcttgctt 6218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 11280920 - 11280839
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||| ||||||||||||| ||||||||||| |||||    
T  11280920 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagcttgttctgatgaagttgctcctgaagcttgctt 11280839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37868717 - 37868865
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  37868717 gattcagttgatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatatcagttttggatgaattacctgaagattgagctt 37868807  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagc 158  Q
    |||| ||| |||||||||||||||| ||  | |||||||| |||||||||||||||||    
T  37868808 ctgggtgaactgcttctggagcttttgaaacaggttctgaagaagtagctcctgaagc 37868865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37877235 - 37877383
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  37877235 gattcagttgatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatatcagttttggatgaattacctgaagattgagctt 37877325  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagc 158  Q
    |||| ||| |||||||||||||||| ||  | |||||||| |||||||||||||||||    
T  37877326 ctgggtgaactgcttctggagcttttgaaacaggttctgaagaagtagctcctgaagc 37877383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 4406653 - 4406930
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttt----tgaggaag--tacctgaagaatgagcttctggatgagctgcttctggag 121  Q
    ||||||| |||||||||||||||||||||| ||||| | ||||||||    |||| | |  ||||| |||||||||||||||| ||||| ||||||| ||    
T  4406653 gagggtgaagatggaaggtcaggaatctgagtattgcttttagctttaggttgagaaggaatacctaaagaatgagcttctggttgagcagcttctgaag 4406752  T
Q  122 ctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaa 221  Q
    ||         ||||| || ||||||||| ||||||  ||||||||||| |  |||||   || ||  ||  |||||||| | |||||||||||||| |     
T  4406753 ct---------ggttcggaagaagtagcttctgaagtgtgctttccttttagggcttgccttaacagatttgctccttccctaacagtttcctcttcaag 4406843  T
Q  222 ctcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
     |||| |||||||| ||||||    |  |||||||||||| | |||||||| ||||| |||||||| |||||||| |||||||||||    
T  4406844 ttcagcagccaaggaagcaatttctgcagctttctcaggagcaagctcataccctgctgccttgagctgttcatctctttgcttctc 4406930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 5512982 - 5513063
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| | ||||||||| |||||    
T  5512982 tacctgaggactgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgttcctgaagcttgctt 5513063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 5545541 - 5545460
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| | ||||||||| |||||    
T  5545541 tacctgaggactgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgttcctgaagcttgctt 5545460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 16427678 - 16427597
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||||||||||||||| ||||||||||| |||||    
T  16427678 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggttctgatgaagttgctcctgaagcttgctt 16427597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 5874221 - 5874140
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  5874221 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 5874140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 12294710 - 12294629
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  12294710 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 12294629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 24392030 - 24391949
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  24392030 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 24391949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 41685980 - 41686061
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  41685980 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 41686061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 16389472 - 16389318
Alignment:
Q  10 gatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattatt-gatcttagcttttgaggaagtacctgaagaatgagcttctggatga 108  Q
    |||||||||||| ||||||| ||||||   ||||||  |||||||||| |||| |||   |||||| || ||| ||||| ||||||||| ||||| ||||    
T  16389472 gatgatgatgagagtgaagaaggtggaataggaagggtaggaatctgagtattagatgg-agctttagatgaattacctaaagaatgaggttctgaatga 16389374  T
Q  109 gctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    | ||||||||||||||| |  |  || |||||||| || ||||||||||| |||||    
T  16389373 ggtgcttctggagcttttgtagaaggatctgatgatgtggctcctgaagcttgctt 16389318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 24662188 - 24662267
Alignment:
Q  85 cctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  24662188 cctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 24662267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 5625892 - 5625822
Alignment:
Q  94 tgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  5625892 tgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 5625822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 1792282 - 1792233
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttg 179  Q
    ||||||||||| ||||||| || |||||||| ||||||||||||||||||    
T  1792282 gctggttctgaagaagtagttcttgaagcattctttcctttcaaagcttg 1792233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 4746035 - 4746116
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||   ||| ||||||||||| ||||||||||| |||||    
T  4746035 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaattggatctgatgaagttgctcctgaagcttgctt 4746116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 9004155 - 9004053
Alignment:
Q  194 ctccttccttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttc 293  Q
    |||||||| | |||||||| ||||| | ||||| |||||| | |||||| |  |  |||||||||| |||||||||||| ||||| || ||||| |||||    
T  9004155 ctccttccctaacagtttcttcttcaatctcagcagccaaagaagcaattaccgcagctttctcagcatccagctcataccctgctgctttgagctgttc 9004056  T
Q  294 atc 296  Q
    |||    
T  9004055 atc 9004053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 14583744 - 14583828
Alignment:
Q  194 ctccttccttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgc 278  Q
    ||||||||||||||||||||||||| || |||| ||| || |    ||||||||  |||||||||| ||||| |||||| |||||    
T  14583744 ctccttccttgacagtttcctcttccaattcagcagctaatgagttaataatagcagctttctcagcatccacctcataccctgc 14583828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 28322825 - 28322789
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaa 43  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  28322825 gtggatgatgaagagggtgaagagggtagagatggaa 28322789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 40859 - 40580
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  40859 gagggtgaagatggaaggtcaggaatctgagtattgacattagcttttaaggaagtacctgaagagtgaacttctggatgagctgcttctggagctttag 40760  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    |||||||||||||||||||||||||| ||||||||||  ||||||||||||| |||| ||  || |||||||||| ||||||||| | ||| |  ||||     
T  40759 atgctggttctgatgaagtagctcctaaagcatgcttgtctttcaaagcttgagataacagttttactccttcctagacagtttctttttcaacttcagc 40660  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||||| | |||||    ||  || ||||||||| | |||| |||||||||||||||||||||||| ||||||| |||||    
T  40659 agccaaagcagcaaactcagcagccttctcaggagcaagcttatatcctgcagccttgagttgttcctcccttttcttct 40580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 33426 - 33507
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  33426 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 33507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 9162020 - 9162204
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  9162020 gagggtgaagatggaaggtcaggaatctgagtattgacattagcttttaaggaagtacctgaagagtgagcttctagatgagctgcttctggagctttag 9162119  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||| || |||||||||| |||||||||    
T  9162120 atgctggttctgatgaagtagctcctgaagcatgcttatctttcaaagcttgagataacaattttactccttcctggacagtttc 9162204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 15886285 - 15886080
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| ||||| |||||||||||| ||||||| | ||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15886285 gagggtgaagaaggaagttcaggaatctgagtattgatatcagcttttaaagaagtacctgaagagtgagcttctggatgagctgcttctggagctttag 15886186  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||  || ||||| |||| ||||||||||| ||| | |||||     
T  15886185 atgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagatagcagttttactccctcctggacagtttccttttcaacctcagc 15886086  T
Q  228 agccaa 233  Q
    ||||||    
T  15886085 agccaa 15886080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 293
Target Start/End: Original strand, 10560466 - 10560731
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||||||||| ||||||| ||||||| | || ||||   |||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  10560466 gagggtgaagaaggaaggtcagtaatctgagtattgatgtcagtttttagtgaagtacctgaagagtgagcttcttgatgagctgcttctgaagctttag 10560565  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    | ||||||||||||||||||||| ||||||| |||||  ||||||||||||| |||||||  || ||||| ||||  |||||||||| ||| | |||||     
T  10560566 aagctggttctgatgaagtagcttctgaagcctgcttgtctttcaaagcttgagatagcagtttcactccctcctgaacagtttccttttcaacctcagc 10560665  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttc 293  Q
    |||||| |||||||    ||  || ||||||||| | |||| ||| ||||||||||||||||||||    
T  10560666 agccaacgtagcaaactcagcagccttctcaggagctagcttataccctgcagccttgagttgttc 10560731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 21001035 - 21000849
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||||||||||||||||| || |||| | || ||||   || ||||||||||| |||||||||||| || ||||||||| ||||| ||    
T  21001035 gagggtgaagaaggaaggtcaggaatctgagtactgatgtcagtttttagtgatgtacctgaagagtgagcttctggaagatctgcttctgaagcttgag 21000936  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcct 214  Q
    | ||||||||||| ||||||||||||||||| |||||   |||||||||||| || |||| ||| ||||| ||||  ||||||||||    
T  21000935 aagctggttctgaagaagtagctcctgaagcttgcttgtttttcaaagcttgagaaagcagcttcactccctcctgaacagtttcct 21000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 2714224 - 2714143
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| |||||    
T  2714224 tacctgaagactgagcttctggatgaactgcttctggagcttttgaagctggttctgatgaagttgctcctgaagcttgctt 2714143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 308
Target Start/End: Complemental strand, 25209649 - 25209384
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||||||      |||||||||||||||||||||||| ||||| ||||||| ||||        
T  25209649 gagggtgaagatggaaggtcaggaatctgaatattgactttagcttt------agtacctgaagaatgagcttctggttgagcagcttctgaagct---- 25209560  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
         |||||||| ||||||||||||||||||||||| |||||||  ||||||  || ||    | |||||||||| ||||| || ||| | | ||||      
T  25209559 -----ggttctgaagaagtagctcctgaagcatgcttacctttcagtgcttgtcttaacagagcggctccttccttaacagtatcttctgcaatctcaac 25209465  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    |||||| | |||||| || |  ||||||||| || | |||||||| ||||| ||||| |  |||||||| |||||||||||    
T  25209464 agccaaagaagcaattattgcagctttctcaagagcaagctcataccctgctgccttaaactgttcatctctttgcttctc 25209384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 5687802 - 5687941
Alignment:
Q  48 aggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagta 147  Q
    |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||||||||||||||||||||| ||  | |||||||| |||||     
T  5687802 aggaatctgagtatagatatcagttttggatgaaatacctgaagagtgagcttctggatgagctgcttctggagcttttgaaacaggttctgaagaagtg 5687901  T
Q  148 gctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    ||||||||||| |||||    ||||| |||||||||||||    
T  5687902 gctcctgaagcttgcttattcttcaaggcttgtgatagca 5687941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 6875897 - 6875743
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  6875897 gattcagttgatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatatcaggtttggatgaattacctgaagattgagctt 6875807  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||| |||||||||||||||| |   | |||||||||||||||||||||||||| |||||    
T  6875806 ctggatgaactgcttctggagcttttgcaacaggttctgatgaagtagctcctgaagcttgctt 6875743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 4214290 - 4214404
Alignment:
Q  50 gaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagc 149  Q
    |||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  |||||||||||||||| ||    
T  4214290 gaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagcttttgaaactggttctgatgaagttgc 4214389  T
Q  150 tcctgaagcatgctt 164  Q
    ||||||||| |||||    
T  4214390 tcctgaagcttgctt 4214404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 169136 - 169284
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  169136 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggat 169226  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  | |||||||||||||| ||||||||||| |||||    
T  169227 gaactgcttctggagcttttgaaacaggttctgatgaagttgctcctgaagcttgctt 169284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 1989864 - 1989945
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  1989864 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 1989945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 8010674 - 8010593
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  8010674 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 8010593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 11007483 - 11007564
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  11007483 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 11007564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 8619637 - 8619752
Alignment:
Q  49 ggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtag 148  Q
    ||||||||| ||| ||| | || ||| || ||| ||| |||||| ||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |    
T  8619637 ggaatctgagtatagatgtcaggtttggatgaattacttgaagattgagcttctggatgaactgcttctggagcttttgaaactggttctgatgaagttg 8619736  T
Q  149 ctcctgaagcatgctt 164  Q
    |||||||||| |||||    
T  8619737 ctcctgaagcttgctt 8619752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 17958741 - 17958626
Alignment:
Q  49 ggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtag 148  Q
    ||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  || ||||||||||||| |    
T  17958741 ggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagcttttgaaacttgttctgatgaagttg 17958642  T
Q  149 ctcctgaagcatgctt 164  Q
    |||||||||| |||||    
T  17958641 ctcctgaagcttgctt 17958626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 9087526 - 9087607
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| || ||||||||||||||||| ||||||||||| |||||    
T  9087526 tacctgaggactgagcttctggatgaattgcttctggagcttttgaagctggttctgatgaagttgctcctgaagcttgctt 9087607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 42868157 - 42868238
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||| ||||||||||||| ||||||||||| |||||    
T  42868157 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagcttgttctgatgaagttgctcctgaagcttgctt 42868238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 9435568 - 9435672
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtga 182  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||  | |||||||| ||||| ||||||||||| |||||    ||||| ||||||||    
T  9435568 tacctgaagattgagcttctggatgaactgcttctggagcttttgaaacaggttctgaagaagtggctcctgaagcttgcttattcttcaaggcttgtga 9435667  T
Q  183 tagca 187  Q
    |||||    
T  9435668 tagca 9435672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 26694352 - 26694271
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  26694352 tacctgaggactgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 26694271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 24737022 - 24737103
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  24737022 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 24737103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 26398707 - 26398626
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  26398707 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 26398626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 40050715 - 40050634
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||| ||  |||||||||||| || ||  |||||||||||||||| | ||||||||| |||||    
T  40050715 tacctgaggactgagcttctggaggaattgcttctggagcctttgaaactggttctgatgaagttgttcctgaagcttgctt 40050634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 22091480 - 22091532
Alignment:
Q  112 gcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  22091480 gcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 22091532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 28 - 307
Target Start/End: Original strand, 19420672 - 19420951
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19420672 gagggtgaagatggaaggtcaggaatctgagtattgatattagcttttaaagaagtacctgaagagtgagcttctggatgagctgcttctggagctttag 19420771  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||| ||  || ||||| |||| ||||| ||| | ||| | |||||     
T  19420772 atgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagataacagttttactccctcctggacagcttctttttcaacctcagc 19420871  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||||| | |||||    ||  || ||||||||| | |||| ||| |||||||||||||||||||| || |||| |||||    
T  19420872 agccaaagcagcaaactcagcagccttctcaggagcaagcttataccctgcagccttgagttgttcctctcttttcttct 19420951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 293
Target Start/End: Complemental strand, 30323235 - 30322969
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgag-gaagtacctgaagaatgagcttctggatgagctgcttctggagcttta 126  Q
    ||||||| ||| |||||||||||||||||| ||||||| | || |||| || |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  30323235 gagggtgaagaaggaaggtcaggaatctgagtattgatgtcagttttttagtgaagtacctgaagagtgagcttctggatgagctgcttctgaagcttta 30323136  T
Q  127 gatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcag 226  Q
    || ||||||||||| ||||||||| ||||||| |||||  ||||||||||||| |||||||  || ||||| ||||  |||||||||| ||| | |||||    
T  30323135 gaagctggttctgaagaagtagcttctgaagcctgcttgtctttcaaagcttgagatagcagtttcactccctcctgaacagtttccttttcaacctcag 30323036  T
Q  227 aagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttc 293  Q
     |||||| | |||||    ||  || ||||||||| | |||| ||| ||||||||||||||||||||    
T  30323035 cagccaacgcagcaaactcagcagccttctcaggagctagcttataccctgcagccttgagttgttc 30322969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 308
Target Start/End: Complemental strand, 23467765 - 23467572
Alignment:
Q  115 tctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcct 214  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||   ||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  23467765 tctggagctttagaagctggttcagatgaagtagctcctgaagcatgcttatttttcagagcttgtgataacaacttgactccttcctggacagtttcct 23467666  T
Q  215 cttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    |||||||||||| ||| || | ||| ||   ||  || || |||| | | |||||||||||||||||||||||||| |||||||||||||||||    
T  23467665 cttctaactcagcagctaaagcagccatctcagcagccttttcagtagcaagctcatatcctgcagccttgagttgctcatccctttgcttctc 23467572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 19227255 - 19227460
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||||||||||||||||| ||||||| | || ||||   |||||||||||||| |||| |||||||||||||||||||| ||||||||    
T  19227255 gagggtgaagagggaaggtcaggaatctgagtattgatgtcagtttttagagaagtacctgaagagtgaggttctggatgagctgcttctgaagctttag 19227354  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    | ||||||||||||||||||||| || |||| |||||   |||||||||||| |||||||  || ||||| ||||  |||||||||| ||| | |||||     
T  19227355 aagctggttctgatgaagtagcttctaaagcctgcttgtttttcaaagcttgagatagcagtttcactccctcctgaacagtttccttttcaacctcagc 19227454  T
Q  228 agccaa 233  Q
    ||||||    
T  19227455 agccaa 19227460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 26113545 - 26113699
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  26113545 gattcagttgatgatgatgagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaattacctgaagattgagctt 26113635  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||| |||| |||||||||||||||| ||  |||||||||||||||||||||||||||| |||||    
T  26113636 ctgaatgaactgcttctggagcttttgaaactggttctgatgaagtagctcctgaagcttgctt 26113699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 32086309 - 32086161
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  32086309 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggat 32086219  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  | |||||||||||||| ||||||||||| |||||    
T  32086218 gaactgcttctggagcttttgaaacaggttctgatgaagttgctcctgaagcttgctt 32086161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 36295234 - 36295315
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  36295234 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 36295315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 6153359 - 6153474
Alignment:
Q  49 ggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtag 148  Q
    ||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  | |||||||||||||| |    
T  6153359 ggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagcttttgaaacaggttctgatgaagttg 6153458  T
Q  149 ctcctgaagcatgctt 164  Q
    |||||||||| |||||    
T  6153459 ctcctgaagcttgctt 6153474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 19131020 - 19131159
Alignment:
Q  48 aggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagta 147  Q
    |||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  | |||||||| |||||     
T  19131020 aggaatctgagtatagatatcagttttggatgaaatacctgaagattgagcttctggatgaactgcttctggagcttttgaaacaggttctgaagaagtg 19131119  T
Q  148 gctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    ||||||||||| |||||    ||||| |||||||||||||    
T  19131120 gctcctgaagcttgcttattcttcaaggcttgtgatagca 19131159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 13686534 - 13686453
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| ||||||||||||| |  || ||||||||||||||||| ||||||||||| |||||    
T  13686534 tacctgaagactgagcttctggatgaactgcttctggagcatctgaagctggttctgatgaagttgctcctgaagcttgctt 13686453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 36080254 - 36080335
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||| ||||||||||||| || |||||||| |||||    
T  36080254 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagcttgttctgatgaagttgcacctgaagcttgctt 36080335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 244120 - 244201
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| | ||||||||| |||||    
T  244120 tacctgaggactgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgttcctgaagcttgctt 244201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 797490 - 797571
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| ||  |||||||||||||||| | ||||||||| |||||    
T  797490 tacctgaggactgagcttctggatgaattgcttctggagcttttgaaactggttctgatgaagttgttcctgaagcttgctt 797571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 3357190 - 3357109
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  3357190 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 3357109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 9343409 - 9343490
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  9343409 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 9343490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 44483431 - 44483512
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  44483431 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 44483512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 25682295 - 25682244
Alignment:
Q  256 tcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||||| | |||||||| |||||||||||||||||||| |||||||||||||    
T  25682295 tcaggagcaagctcataccctgcagccttgagttgttcctccctttgcttct 25682244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 29079021 - 29079102
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||| ||  |||||||||||| || ||  |||||||||||||||| | ||||||||| |||||    
T  29079021 tacctgaggactgagcttctggaggaattgcttctggagcctttgaaactggttctgatgaagttgttcctgaagcttgctt 29079102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19420654 - 19420682
Alignment:
Q  1 gatttagtggatgatgatgagggtgaaga 29  Q
    |||||||||||||||||||||||||||||    
T  19420654 gatttagtggatgatgatgagggtgaaga 19420682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 12360375 - 12360672
Alignment:
Q  13 gatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctg 112  Q
    |||||||||||||||||||||| |  |||||||  |||||||||| ||||||| |||||||| || |||||||||||||| | | |||||||||||||||    
T  12360375 gatgatgagggtgaagagggtgaaattggaaggctaggaatctgagtattgattttagctttagatgaagtacctgaagagttaccttctggatgagctg 12360474  T
Q  113 cttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||||  ||||||||||||| |||||||  || ||||| ||||  ||||||||    
T  12360475 cttctggagctttagaagctggttctgatgaagtagcttctgaggcatgcttgtctttcaaagcttgagatagcagtttcactccctcctgaacagtttc 12360574  T
Q  213 ctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctcct 310  Q
    || ||| | ||||| |||||| |||||||    ||  || || |||||| | |||| ||| |||||||||||||||||||| || |||| ||||||||    
T  12360575 cttttcaacctcagcagccaacgtagcaaactcagcagccttgtcaggagctagcttataccctgcagccttgagttgttcctctcttttcttctcct 12360672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 20038382 - 20038198
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||| ||||||||||||| ||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20038382 gagggtgaagaaggaacgtcaggaatctgagtattgatattagcttttaaagaagtacctgaagagtgagcttctggatgagctgcttctggagctttag 20038283  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||  || ||||| |||| |||||||||    
T  20038282 atgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagatagcagttttactccctcctggacagtttc 20038198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 25796106 - 25796418
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttt----tgaggaag--tacctgaagaat 94  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||  ||||||||    |||| | |  ||||||||||||    
T  25796106 gattcagtggatgatgatgagggtgaagagggtgaagatggaaggtcaagaatctgagtattgactttagctttaggttgagaaggaatacctgaagaat 25796205  T
Q  95 gagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgac 194  Q
    || ||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||| |||    ||    
T  25796206 gaccttctggatgagctgcttctgaagctttagaagcttgttctaatgaagtagctcctgaagcatgctttgctttcaaagcttatgataacaatgctac 25796305  T
Q  195 tccttccttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttca 294  Q
    |||||||||||||||||| | |||||| |||| ||| ||   ||| |    ||  || ||||||||| | |||||||   |||||||||||||||||||     
T  25796306 tccttccttgacagtttcttgttctaattcagcagctaaaacagccaactcagcagccttctcaggagcaagctcatgctctgcagccttgagttgttcc 25796405  T
Q  295 tccctttgcttct 307  Q
    |||||||||||||    
T  25796406 tccctttgcttct 25796418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 9121044 - 9120765
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||||||||||||||||| || |||| | || ||||   || |||| |||||| |||||||||||| || ||||||||| ||||| ||    
T  9121044 gagggtgaagaaggaaggtcaggaatctgagtactgatgtcagtttttagtgatgtacttgaagagtgagcttctggaagatctgcttctgaagcttgag 9120945  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    | ||||||||||| ||||||||||||||||| |||||  ||||||||||||| || |||| ||| ||||| ||||  |||||||||| ||| | |||||     
T  9120944 aagctggttctgaagaagtagctcctgaagcttgcttgtctttcaaagcttgagaaagcagcttcactccctcctgaacagtttccttttcaacctcagc 9120845  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||||| | |||||    ||  || ||||||||| | ||||  || ||||||||||| |||||||| || |||| |||||    
T  9120844 agccaacgcagcaaactcagcagccttctcaggagctagcttgtaccctgcagccttaagttgttcctctcttttcttct 9120765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 26867068 - 26867149
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| |||||    
T  26867068 tacctgaagactgagcttctggatgaactgcttctggagcttttgaagctggttctgatgaagttgctcctgaagcttgctt 26867149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 34815743 - 34815595
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  34815743 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggat 34815653  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  34815652 gaactgcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 34815595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 12725374 - 12725293
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  12725374 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 12725293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 27344012 - 27344093
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  27344012 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 27344093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 27404752 - 27404833
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  27404752 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 27404833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 4633195 - 4633276
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || | ||||||||||||||| ||||||||||| |||||    
T  4633195 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagatggttctgatgaagttgctcctgaagcttgctt 4633276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 16932667 - 16932748
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||||| || ||||||||||||||||| ||||||||||| |||||    
T  16932667 tacctgaggactgagcttctggatgaattgcttctggagcttttgaagctggttctgatgaagttgctcctgaagcttgctt 16932748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 32309582 - 32309501
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || | ||||||||||||||| ||||||||||| |||||    
T  32309582 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagatggttctgatgaagttgctcctgaagcttgctt 32309501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 305
Target Start/End: Complemental strand, 18923822 - 18923647
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcagaag 229  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||   || |||     ||||||||||||||||||| ||| | | ||||| ||    
T  18923822 gctggttctgaagaagtagctcctgaagcattctttcctttcaaagcttgacttaacaaggatgctccttccttgacagtttcttctgcaatctcagcag 18923723  T
Q  230 ccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgctt 305  Q
    | || |  |||||    |  |||||||||||| | || || || ||||| |||||||| |||||||||||||||||    
T  18923722 ctaatgaggcaatttctgcagctttctcaggagcaagttcgtaccctgctgccttgagctgttcatccctttgctt 18923647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 12857170 - 12857308
Alignment:
Q  49 ggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtag 148  Q
    ||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| |  |  || |||||||| || |    
T  12857170 ggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagcttttgtagaaggatctgatgatgtgg 12857269  T
Q  149 ctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    |||||||||| |||||    |||||||||||||| ||||    
T  12857270 ctcctgaagcttgcttgttcttcaaagcttgtgaaagca 12857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 3663677 - 3663758
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||| ||||||||| | ||  |||||||||||||||| ||||||||||| |||||    
T  3663677 tacctgaggactgagcttctggatgaattgcatctggagctgttgaaactggttctgatgaagttgctcctgaagcttgctt 3663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 25789986 - 25790067
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  25789986 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 25790067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 26027677 - 26027758
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  26027677 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 26027758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 25733203 - 25733091
Alignment:
Q  195 tccttccttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttca 294  Q
    ||||||| | |||||||| ||||| | ||||| | |||||| |||||| | ||  |||||||||| ||| |||||||| || ||||| ||||||||||||    
T  25733203 tccttccctaacagtttcttcttcaatctcagcaaccaaggaagcaatcacagcagctttctcagcatcaagctcatacccagcagctttgagttgttca 25733104  T
Q  295 tccctttgcttct 307  Q
    || || |||||||    
T  25733103 tctctctgcttct 25733091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 27375003 - 27375121
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattatt-gatcttagcttttgaggaagtacctgaagaatgagcttctgga 105  Q
    |||||||||||||||||||||||||||||||  || |||    |||||||| |||| |||   |||||  || ||| ||||||||||||||||||||| |    
T  27375003 gtggatgatgatgagggtgaagagggtggagtaggtagggtgtgaatctgagtattagat-ggagcttgagatgaaatacctgaagaatgagcttctgaa 27375101  T
Q  106 tgagctgcttctggagcttt 125  Q
     ||| |||||||||||||||    
T  27375102 ggaggtgcttctggagcttt 27375121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 27465360 - 27465478
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattatt-gatcttagcttttgaggaagtacctgaagaatgagcttctgga 105  Q
    |||||||||||||||||||||||||||||||  || |||    |||||||| |||| |||   |||||  || ||| ||||||||||||||||||||| |    
T  27465360 gtggatgatgatgagggtgaagagggtggagtaggtagggtgtgaatctgagtattagat-ggagcttgagatgaaatacctgaagaatgagcttctgaa 27465458  T
Q  106 tgagctgcttctggagcttt 125  Q
     ||| |||||||||||||||    
T  27465459 ggaggtgcttctggagcttt 27465478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 32970430 - 32970378
Alignment:
Q  112 gcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  32970430 gcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 32970378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 13915637 - 13915750
Alignment:
Q  194 ctccttccttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttc 293  Q
    |||||||||| ||||||| |||||| || |||| ||| || |  ||||| | ||  |||||||||| |||||||||||| ||| | || || ||||||||    
T  13915637 ctccttccttaacagtttgctcttccaattcagcagctaaagaggcaattacagcagctttctcagaatccagctcataccctactgctttaagttgttc 13915736  T
Q  294 atccctttgcttct 307  Q
    ||| |||| |||||    
T  13915737 atctcttttcttct 13915750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9121062 - 9121034
Alignment:
Q  1 gatttagtggatgatgatgagggtgaaga 29  Q
    |||||||||||||||||||||||||||||    
T  9121062 gatttagtggatgatgatgagggtgaaga 9121034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 32970511 - 32970475
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaa 43  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  32970511 gtggatgatgaagagggtgaagagggtagagatggaa 32970475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 3398 - 3119
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||||||||||||||||| ||||||| | |||||||   |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  3398 gagggtgaagaaggaaggtcaggaatctgagtattgatatcagcttttagagaagtacctgaagagtgagcttctggatgagctgcttctgaagctttag 3299  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    ||||||||||||||||||||||| ||||||| |||||  ||||||||||||| ||||| |  || ||||||||||  |||||||||| ||| | |||||     
T  3298 atgctggttctgatgaagtagcttctgaagcctgcttgtctttcaaagcttgagatagtagtttcactccttcctgtacagtttccttttcaacctcagc 3199  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||||| | |||||    ||  || |||||| || | |||| ||| |||||||||||||||||||| || |||| |||||    
T  3198 agccaacgcagcaaactcagcagccttctcaagagcaagcttataccctgcagccttgagttgttcctctcttttcttct 3119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 26562761 - 26562944
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||||||||||||||||| ||||||| | ||||||| | |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  26562761 gagggtgaagatggaaggtcaggaatctgagtattgatatcagcttttaaagaagtacctgaagtgtgagcttctggatgagctgcttctggagctttag 26562860  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagttt 211  Q
    | ||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||  || ||||| |||| ||||||||    
T  26562861 aagctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagatagcagttttactccctcctggacagttt 26562944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 23157846 - 23157658
Alignment:
Q  24 tgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagct 123  Q
    |||||| |||| |||||||||||||||||||||| ||||||| ||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||    
T  23157846 tgaagatggtgaagatggaaggtcaggaatctgagtattgatattatcttttaaagaagtacctgaagagtgagcttctggatgagctgcttctggagct 23157747  T
Q  124 ttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    || |||||||||||||||||||||||||||||||| | |||  ||||||||||||| |||| ||  || ||||| |||| |||||||||    
T  23157746 tttgatgctggttctgatgaagtagctcctgaagcctacttgtctttcaaagcttgagatatcagttttactccctcctggacagtttc 23157658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 7681550 - 7681729
Alignment:
Q  18 tgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttct 117  Q
    ||||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||               ||||||    
T  7681550 tgaggatgatgagggtgaagatggaaggtcaggaatctgagtattgatcttagctttggaggaagtacctgaagagtga---------------gcttct 7681634  T
Q  118 ggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||| |||||     |||||||||||||||||||    
T  7681635 ggagctttagatgctggttcagatgaagtagctcctgaagcatgcttatttttcaaagcttgtgacagcaatgctgctccttccttgacagtttc 7681729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 152215 - 151936
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||||||||||||||||| || |||| | || ||||   || ||||||||||| |||||||||||| |||||||||||| ||||||||    
T  152215 gagggtgaagaaggaaggtcaggaatctgagtactgatgtcagtttttagtgatgtacctgaagagtgagcttctggaagagctgcttctgaagctttag 152116  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    | ||||||||||| ||||||||| ||||||| |||||  ||||||||||||| || ||||  || || || ||||  |||||||||| ||| | |||||     
T  152115 aagctggttctgaagaagtagcttctgaagcttgcttgtctttcaaagcttgagaaagcagtttcaccccctcctgaacagtttccttttcaacctcagc 152016  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttct 307  Q
    |||||| | |||||    ||  || ||||||||| | |||| ||| ||||||||||| |||||||| || |||| |||||    
T  152015 agccaacgcagcaaactcagcagccttctcaggagctagcttataccctgcagccttaagttgttcctctcttttcttct 151936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 5648324 - 5648179
Alignment:
Q  10 gatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgag 109  Q
    |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||||     
T  5648324 gatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaa 5648234  T
Q  110 ctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||| |||||    
T  5648233 ctgcttctggagcatttgatactggttctgatgaagtagctcctgaagcttgctt 5648179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 4169499 - 4169653
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  4169499 gattcagttgatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagctt 4169589  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||| |||||||||||||||| |   | |||||||||||||||||||||||||| |||||    
T  4169590 ctggatgaactgcttctggagcttttgcaacaggttctgatgaagtagctcctgaagcttgctt 4169653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 19181147 - 19181286
Alignment:
Q  48 aggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagta 147  Q
    |||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  | |||||||| ||||||    
T  19181147 aggaatctgagtatagatatcagttttggatgaaatacctgaagattgagcttctggatgaactgcttctggagcttttgaaacaggttctgaagaagta 19181246  T
Q  148 gctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    ||||||||||| |||||    ||||| |||||||||||||    
T  19181247 gctcctgaagcttgcttattcttcaaggcttgtgatagca 19181286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 21865899 - 21866014
Alignment:
Q  49 ggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtag 148  Q
    ||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |    
T  21865899 ggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagcttttgaaactggttctgatgaagttg 21865998  T
Q  149 ctcctgaagcatgctt 164  Q
    |||||||||| |||||    
T  21865999 ctcctgaagcttgctt 21866014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 35399079 - 35398998
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  35399079 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 35398998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 38097344 - 38097425
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  38097344 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 38097425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 3173863 - 3173944
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||| ||||||||||||| ||||||||||| |||||    
T  3173863 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagcttgttctgatgaagttgctcctgaagcttgctt 3173944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 5835488 - 5835569
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || | ||||||||||||||| ||||||||||| |||||    
T  5835488 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagttggttctgatgaagttgctcctgaagcttgctt 5835569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 35646604 - 35646523
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| || ||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  35646604 tacctgaagactgagcttctggatgaactacttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 35646523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 47616473 - 47616392
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || | ||||||||||||||| ||||||||||| |||||    
T  47616473 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagttggttctgatgaagttgctcctgaagcttgctt 47616392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 7509531 - 7509612
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  7509531 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 7509612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 36244997 - 36244916
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  36244997 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 36244916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 51654441 - 51654360
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  51654441 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 51654360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 21163508 - 21163550
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttca 172  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  21163508 gctggttctgaagaagtagctcctgaagcatgcttacctttca 21163550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 12621675 - 12621623
Alignment:
Q  112 gcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  12621675 gcttctggagcttttgaaactggttctgatgaagttgctcctgaagcttgctt 12621623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: scaffold0398
Description:

Target: scaffold0398; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 2266 - 2043
Alignment:
Q  10 gatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgag 109  Q
    ||||||||||||||||||||||||| |   ||||||||||| |||||| ||||||| | |||||| || |||||||||||||| ||||||||||||||||    
T  2266 gatgatgatgagggtgaagagggtgaaataggaaggtcaggtatctgagtattgatttcagctttagatgaagtacctgaagagtgagcttctggatgag 2167  T
Q  110 ctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagt 209  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    |||||||||||||| |||||     ||||||| ||||||||    
T  2166 ctgcttctggagctttagatgcaggttcagatgaagtagctcctgatgcatgcttattcttcaaagcttgtgaaagcaatgctgctccttctttgacagt 2067  T
Q  210 ttcctcttctaactcagaagccaa 233  Q
    ||| |  |||||||||| ||||||    
T  2066 ttcttgctctaactcagcagccaa 2043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 10521 - 10298
Alignment:
Q  10 gatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgag 109  Q
    ||||||||||||||||||||||||| |   ||||||||||| |||||| ||||||| | |||||| || |||||||||||||| ||||||||||||||||    
T  10521 gatgatgatgagggtgaagagggtgaaataggaaggtcaggtatctgagtattgatttcagctttagatgaagtacctgaagagtgagcttctggatgag 10422  T
Q  110 ctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagt 209  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    |||||||||||||| |||||     ||||||| ||||||||    
T  10421 ctgcttctggagctttagatgcaggttcagatgaagtagctcctgatgcatgcttattcttcaaagcttgtgaaagcaatgctgctccttctttgacagt 10322  T
Q  210 ttcctcttctaactcagaagccaa 233  Q
    ||| |  |||||||||| ||||||    
T  10321 ttcttgctctaactcagcagccaa 10298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 2019 - 1980
Alignment:
Q  269 catatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  2019 cataccctgcagccttgagttgctcatccctttgcttctc 1980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 10274 - 10235
Alignment:
Q  269 catatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  10274 cataccctgcagccttgagttgctcatccctttgcttctc 10235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1638 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold1638
Description:

Target: scaffold1638; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 273 - 421
Alignment:
Q  40 ggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctg 139  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||     
T  273 ggaaggtcaggaatctgattattgatcttagctttggatgaagtacctgaagagtgagcttctggattagctgcttctggagctttagaagcaggttcta 372  T
Q  140 atgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaa 188  Q
    ||||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  373 atgaagtagctcctgaagcatgcttttttttcaaatcttgtgaaagcaa 421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 2174 - 1969
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||||||||||||||||| ||||||| | || ||||   |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  2174 gagggtgaagaaggaaggtcaggaatctgagtattgatgtcagtttttagagaagtacctgaagagtgagcttctggatgagctgcttctgaagctttag 2075  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    | ||||||||||||||||||||| ||||||| |||||  ||||||||||||  |||||||  || ||||| |||| ||||||||||| ||| | |||||     
T  2074 aagctggttctgatgaagtagcttctgaagcctgcttgtctttcaaagcttaagatagcagtttcactccctcctggacagtttccttttcaacctcagc 1975  T
Q  228 agccaa 233  Q
    ||||||    
T  1974 agccaa 1969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1002 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold1002
Description:

Target: scaffold1002; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 2202 - 1910
Alignment:
Q  16 gatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgctt 115  Q
    |||||||||||||| |||| |   ||| |||||||||||||| ||||||| | |||||| || |||||||||||||| | | ||||||||||||||||||    
T  2202 gatgagggtgaagaaggtgaaataggagggtcaggaatctgagtattgatttcagctttagatgaagtacctgaagagttaccttctggatgagctgctt 2103  T
Q  116 ctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctc 215  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||    ||||| |||||||| |||||  | ||||| | || |||| | || |     
T  2102 ctggagctttagaagctggttcagatgaagtagctcctgaagcatgcttattcttcaatgcttgtgaaagcaatgttactccatgctggacaatctcttg 2003  T
Q  216 ttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    ||||||||||| ||| || | |||||    ||  ||||| |||||| | || ||||| ||||||||||||||  | |||||| ||||||||||    
T  2002 ttctaactcagcagctaaagcagcaagctcagcagctttttcaggagcaagttcataccctgcagccttgagacgctcatccttttgcttctc 1910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1465 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1465
Description:

Target: scaffold1465; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 308
Target Start/End: Original strand, 1 - 150
Alignment:
Q  159 atgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctca 258  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| || | ||| ||   ||  || |||| |    
T  1 atgctttcctttcagagctagtgatagcaacttgactccttcctggacagtttcctcttctaactcagcagctaaagcagccatctcagcagccttctaa 100  T
Q  259 ggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    ||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  101 ggagcaagctcataccctgcagccttgagttgttcatccctttgcttctc 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2119 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold2119
Description:

Target: scaffold2119; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 280 - 103
Alignment:
Q  10 gatgatgatgagggtgaagagggtggagat-ggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatga 108  Q
    |||||||| ||||||||||||| || |||| ||| ||| ||| |||||| ||| ||| | |||||| || ||| |||||||||| |||||||||||||||    
T  280 gatgatgaagagggtgaagaggatg-agataggagggttaggtatctgagtatagatttcagctttggatgaaatacctgaagagtgagcttctggatga 182  T
Q  109 gctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    ||||||||||||||||| || || |||||||| ||||| ||||||||||| |||||   |||||| |||||||||||||    
T  181 gctgcttctggagcttttgaagcaggttctgaagaagtggctcctgaagcttgcttatttttcaaggcttgtgatagca 103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 293
Target Start/End: Original strand, 24828 - 25093
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| ||| |||||||||||||||||| || |||| | || ||||   || ||||||||| | ||||||||| |||||||||||| || ||||||||    
T  24828 gagggtgaagaaggaaggtcaggaatctgagtactgatgtcagtttttagtgatgtacctgaatagtgagcttcttgatgagctgcttatgaagctttag 24927  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    | ||||||||||| ||||||||| |||||||||||||  ||||||||||||| || ||||  || ||  | || |  |||||||||| ||| | |||||     
T  24928 aagctggttctgaagaagtagcttctgaagcatgcttgtctttcaaagcttgagaaagcagattcacaacctcatgaacagtttccttttcaacctcagc 25027  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttc 293  Q
    |||||| | |||||    ||  || ||||||||| | |||| ||| ||||||||||||||||||||    
T  25028 agccaacgcagcaaactcagcagccttctcaggagctagcttataccctgcagccttgagttgttc 25093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 14728 - 14593
Alignment:
Q  28 gagggtggagatggaaggtca-ggaatctgattattgatctt-agcttttgaggaagtacctgaagaat-gagcttctggatgagctgcttctggag-ct 123  Q
    ||||||| ||||||||||||| ||||||||| ||||||| || ||||| | | |||||||||||||| | ||||||||||||||||||||||||||| ||    
T  14728 gagggtgaagatggaaggtcaaggaatctgagtattgatatttagcttgtaaagaagtacctgaagagttgagcttctggatgagctgcttctggagtct 14629  T
Q  124 ttagatgc-tggttctgatgaagtagctcctgaagc 158  Q
    |||||||| |||||||||||||||||||||||||||    
T  14628 ttagatgcttggttctgatgaagtagctcctgaagc 14593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 51556 - 51379
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| |||||||||||||||||||||||||||| |||          |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  51556 gattcagtggatgatgatgagggtgaagagggtagagt---------aggaatctgagtatagatatcagttttggatgaaatacctgaagagtgagctt 51466  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    ||||||||||||||||||||||||| || || |||||||| ||||| ||||||||||| |||||    ||||| |||||||||||||    
T  51465 ctggatgagctgcttctggagcttttgaagcaggttctgaagaagtggctcctgaagcttgcttattcttcaaggcttgtgatagca 51379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 194344 - 194633
Alignment:
Q  19 gagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttt----tgaggaag--tacctgaagaatgagcttctggatgagctg 112  Q
    |||| ||| |||||||||||||||||||||||||||||| |||| ||  |||||||    |||| | |  |||||||||| ||| ||| ||  ||||| |    
T  194344 gaggatgatgagggtggagatggaaggtcaggaatctgaatattaattctagctttatattgagaaggaatacctgaagattgaccttttgattgagcag 194443  T
Q  113 cttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttc 212  Q
    ||||||||||||| |||| ||||||||| ||||   ||||||||| ||||||||||||||  | ||||  || ||     ||||||||||||||| ||||    
T  194444 cttctggagcttttgatgttggttctgaagaag---ctcctgaagtatgctttcctttcagggattgtcttaacagtgctactccttccttgacattttc 194540  T
Q  213 ctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgctt 305  Q
     |||||||| |||| ||  || |||||||| | ||  || ||||||||| | |||||||| || || ||||||||||||||||| ||||||||    
T  194541 ttcttctaattcagcagttaaagtagcaatcacagcagccttctcaggagcaagctcatacccagctgccttgagttgttcatctctttgctt 194633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 17920380 - 17920520
Alignment:
Q  24 tgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagct 123  Q
    ||||||||||| ||| || ||   |||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| ||||||||||||||    
T  17920380 tgaagagggtgaagagggtagagaaggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagct 17920479  T
Q  124 ttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || || ||||||||||||||||| ||||||||||| |||||    
T  17920480 tttgaagctggttctgatgaagttgctcctgaagcttgctt 17920520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 19952953 - 19952813
Alignment:
Q  24 tgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagct 123  Q
    ||||||||||| ||| || ||   |||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| ||||||||||||||    
T  19952953 tgaagagggtgaagagggtagagaaggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagct 19952854  T
Q  124 ttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || ||  |||||||||||||||||||||||||||| |||||    
T  19952853 tttgaaactggttctgatgaagtagctcctgaagcttgctt 19952813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 24026042 - 24025902
Alignment:
Q  24 tgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagct 123  Q
    ||||||||||| ||| || ||   |||||||||| ||| ||| | || ||| || ||| |||||||||| ||||||||||||||| ||||||||||||||    
T  24026042 tgaagagggtgaagagggtagagaaggaatctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggatgaactgcttctggagct 24025943  T
Q  124 ttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || || ||||||||||||||||| ||||||||||| |||||    
T  24025942 tttgaagctggttctgatgaagttgctcctgaagcttgctt 24025902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 40468527 - 40468388
Alignment:
Q  48 aggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagta 147  Q
    |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||||||||||||||||||||| || || |||||||| |||||     
T  40468527 aggaatctgagtatagatatcagttttggatgaaatacctgaagagtgagcttctggatgagctgcttctggagcttttgaagcaggttctgaagaagtg 40468428  T
Q  148 gctcctgaagcatgctttcctttcaaagcttgtgatagca 187  Q
    ||||||||||| |||||    ||||| |||||||||||||    
T  40468427 gctcctgaagcttgcttattcttcaaggcttgtgatagca 40468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 308
Target Start/End: Complemental strand, 15205218 - 15204944
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||| ||||||||||| |  |||||| ||||||||      |||||||||||| |||||||||||  |||| |||||||||||||| |    
T  15205218 gagggtgaagatggaaagtcaggaatctaaacattgattttagcttt------agtacctgaagagtgagcttctggtcgagcagcttctggagcttttg 15205125  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    || |||||||||| |   | ||| ||||||||||||| ||||||| |||||||  || ||  ||  |||||||||| ||| |||||||||| |||||||     
T  15205124 atactggttctgaaggtattgcttctgaagcatgcttacctttcagagcttgttttaacagatttgctccttccttaacaatttcctcttcaaactcagc 15205025  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    ||| || |  |||| || ||  ||| | ||||||    || |||| ||||| |||||||| |||||||| |||||||||||    
T  15205024 agctaaagaggcaaaaacagcagctgtttcaggagtaggcacataccctgctgccttgagctgttcatctctttgcttctc 15204944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 27190156 - 27190310
Alignment:
Q  1 gatttagtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagctt 100  Q
    |||| ||| |||||||||||||||||||||||| ||||         |||||||||| ||| ||| | || ||| || ||| |||||||||| |||||||    
T  27190156 gattcagttgatgatgatgagggtgaagagggtagaga---------aggaatctgagtatagatatcaggtttggatgaattacctgaagattgagctt 27190246  T
Q  101 ctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||| ||||||||||||| || ||  | |||||||||||||||||||||||||| |||||    
T  27190247 ctggatgaactgcttctggagcatttgaaacaggttctgatgaagtagctcctgaagcttgctt 27190310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 16258146 - 16258294
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggat 106  Q
    ||||||||||| ||||||||||||||| |||||||||         ||||| ||| ||| | || ||| || ||| |||||||||| |||||||||||||    
T  16258146 gtggatgatgaagagggtgaagagggtagagatggaa---------tctgagtatagatgtcaggtttggatgaattacctgaagattgagcttctggat 16258236  T
Q  107 gagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    || |||||||||||||||| ||  | |||||||||||||| ||||||||||| |||||    
T  16258237 gaactgcttctggagcttttgaaacaggttctgatgaagttgctcctgaagcttgctt 16258294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 24642652 - 24642733
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  24642652 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 24642733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 49509864 - 49509945
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  49509864 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 49509945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 55753764 - 55753683
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  55753764 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagctggttctgatgaagttgctcctgaagcttgctt 55753683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 27658943 - 27659024
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| ||||||||||||| |  || ||||||||||||||||| ||||||||||| |||||    
T  27658943 tacctgaagactgagcttctggatgaactgcttctggagcatctgaagctggttctgatgaagttgctcctgaagcttgctt 27659024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 3375336 - 3375386
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgt 180  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3375336 gctggttctgaagaagtagctcctgaagcatgctttcctttcaaagcttgt 3375386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 308
Target Start/End: Original strand, 16307658 - 16307836
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcagaag 229  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||   || |||     ||||||||||||||||||| ||| | | ||||| ||    
T  16307658 gctggttctgaagaagtagctcctgaagcattctttcctttcaaagcttgacttaacaaggctgctccttccttgacagtttcttctgcaatctcagcag 16307757  T
Q  230 ccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    | || |  |||||    |  ||||| |||||| | |||||||| ||||| ||||||||||||||||| | |||||||||    
T  16307758 ctaacgaggcaatttctgcagctttttcaggagcaagctcataccctgctgccttgagttgttcatctcgttgcttctc 16307836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 305
Target Start/End: Original strand, 19573466 - 19573641
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcagaag 229  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||   || |||     ||||||||||||||||||| ||| | | ||||| ||    
T  19573466 gctggttctgaagaagtagctcctgaagcattctttcctttcaaagcttgacttaacaaggctgctccttccttgacagtttcttctgcaatctcagcag 19573565  T
Q  230 ccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgctt 305  Q
    |||| | ||||||  | |  ||||||||| || | ||||| || ||||| ||||| || ||||||||  |||||||    
T  19573566 ccaatgaagcaatttttgcagctttctcaagagcaagctcttaccctgctgcctttagctgttcatctatttgctt 19573641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 10749122 - 10749041
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  10749122 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 10749041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 10962891 - 10962810
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  10962891 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 10962810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 36020621 - 36020702
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || |||||||||||||||  ||||||||||||| | ||  |||| ||||||||||| ||||||||||| |||||    
T  36020621 tacctgaggactgagcttctggatgaattgcttctggagctgttgaaactggatctgatgaagttgctcctgaagcttgctt 36020702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 16307559 - 16307605
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttt 74  Q
    ||||||| |||||||||||||||||||||| |||||||  |||||||    
T  16307559 gagggtgaagatggaaggtcaggaatctgagtattgattctagcttt 16307605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 21616 - 21878
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||| ||||||||||||| ||||||| ||||||||||      ||||||| |||||||||| ||| |||||         |||||| |    
T  21616 gagggtgaagatggaaagtcaggaatctgaatattgattttagcttttg------tacctgatgaatgagcttttggttgagc---------agcttttg 21700  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    ||||||||||||| ||||   ||||||||| ||||||||||||||  || |||  ||  |      ||||||||||||||||||||||||| |  | ||     
T  21701 atgctggttctgaagaag---ctcctgaagtatgctttcctttcagggcatgtcttaatagggctgctccttccttgacagtttcctcttccagtttagc 21797  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    |||||||| |||||| | ||  |||||||||||| | |||||||| ||||| |||||||| |||||||| |||||||||||    
T  21798 agccaaggaagcaatgacagcagctttctcaggagcaagctcataccctgctgccttgagctgttcatctctttgcttctc 21878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 16529 - 16791
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctggagctttag 127  Q
    ||||||| |||||||| ||||||||||||| ||||||| ||||||||||      ||||||| |||||||||| ||| |||||         |||||| |    
T  16529 gagggtgaagatggaaagtcaggaatctgaatattgattttagcttttg------tacctgatgaatgagcttttggttgagc---------agcttttg 16613  T
Q  128 atgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcaga 227  Q
    ||||||||||||| ||||   ||||||||| ||||||||||||||  || |||  ||  |      ||||||||||||||||||||||||| |  | ||     
T  16614 atgctggttctgaagaag---ctcctgaagtatgctttcctttcagggcatgtcttaatagggctgctccttccttgacagtttcctcttccagtttagc 16710  T
Q  228 agccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    |||||||| |||||| | ||  |||||||||||| | |||||||| | ||| |||||||| |||||||| |||||||||||    
T  16711 agccaaggaagcaatgacagcagctttctcaggagcaagctcataccatgctgccttgagctgttcatctctttgcttctc 16791  T

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Target: scaffold0199 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 20692 - 20773
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||  | |||||||||||||||||||||||||| |||||    
T  20692 tacctgaagattgagcttctggatgaactgcttctggagcttttgaaacaggttctgatgaagtagctcctgaagcttgctt 20773  T

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Target: scaffold0105 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 45515 - 45434
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || ||||||||||||||||| ||||||||||| |||||    
T  45515 tacctgaagactgagcttctggatgaactgcttctggagcttctgaggctggttctgatgaagttgctcctgaagcttgctt 45434  T

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Target: scaffold0454 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 3605 - 3687
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgcttt 165  Q
    |||||||||| ||||||||||||||| |||||||||||||||  || | ||||||||||||||| ||||||||||| ||||||    
T  3605 tacctgaagactgagcttctggatgaactgcttctggagcttctgaagatggttctgatgaagttgctcctgaagcttgcttt 3687  T

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Target: scaffold0085 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 56247 - 56350
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcagaag 229  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||||||| |||||||  || ||||||||||  |||||||||| ||| | ||||| ||    
T  56247 gctggttctgatgaagtagcttctgaagcctgcttgtctttcaaagcttgagatagcagtttcactccttcctgaacagtttccttttcaacctcagcag 56346  T
Q  230 ccaa 233  Q
    ||||    
T  56347 ccaa 56350  T

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Target: scaffold0085; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 56166 - 56256
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctggatgagctgcttctg 118  Q
    ||||||| ||| |||||||||||||||||| ||||||| | || ||||   |||||||||||||| ||||||||||||||||||| |||||    
T  56166 gagggtgaagaaggaaggtcaggaatctgagtattgatgtcagtttttagagaagtacctgaagagtgagcttctggatgagctggttctg 56256  T

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Target: scaffold1362 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1362
Description:

Target: scaffold1362; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 1940 - 1762
Alignment:
Q  130 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagcaacttgactccttccttgacagtttcctcttctaactcagaag 229  Q
    ||||||||||| ||||||||||||||||||||||| |||||||  ||||||  || ||    | |||||||||| | |||||| ||| | | ||||| ||    
T  1940 gctggttctgaagaagtagctcctgaagcatgcttacctttcagtgcttgtcttaacagagcggctccttccttaaaagtttcttctgcaatctcagcag 1841  T
Q  230 ccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttcatccctttgcttctc 308  Q
    |||| | |||||||   |  |||||||||||| | |||||||| ||||| |||||||| | |||||| |||||||||||    
T  1840 ccaacgaagcaatatctgcagctttctcaggagcaagctcataccctgctgccttgagctattcatctctttgcttctc 1762  T

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Target: scaffold0201 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 913 - 1026
Alignment:
Q  194 ctccttccttgacagtttcctcttctaactcagaagccaaggtagcaataatagatgctttctcaggatccagctcatatcctgcagccttgagttgttc 293  Q
    |||||||||||||||| || ||||| | ||||| | |||| | |||||| | || ||||||||||| ||||||||||||||| ||||| || || |||||    
T  913 ctccttccttgacagtgtcttcttcaatctcagcaaccaaagaagcaattacagctgctttctcagcatccagctcatatccagcagctttaagctgttc 1012  T
Q  294 atccctttgcttct 307  Q
    ||| || |||||||    
T  1013 atctctctgcttct 1026  T

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Target: scaffold0747 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0747
Description:

Target: scaffold0747; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 4594 - 4712
Alignment:
Q  7 gtggatgatgatgagggtgaagagggtggagatggaaggtcaggaatctgattatt-gatcttagcttttgaggaagtacctgaagaatgagcttctgga 105  Q
    |||||||||||||| |||||||| ||| |||  ||||||  |||||||||| |||| |||   |||||| || ||| ||||||||||||||| ||||| |    
T  4594 gtggatgatgatgaaggtgaagatggtagagtaggaagggtaggaatctgagtattagatgg-agctttagatgaattacctgaagaatgaggttctgaa 4692  T
Q  106 tgagctgcttctggagcttt 125  Q
    |||| ||||| |||||||||    
T  4693 tgaggtgcttttggagcttt 4712  T

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Target: scaffold1216 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1216
Description:

Target: scaffold1216; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 1453 - 1534
Alignment:
Q  83 tacctgaagaatgagcttctggatgagctgcttctggagctttagatgctggttctgatgaagtagctcctgaagcatgctt 164  Q
    ||||||| || | ||||||||||||||||||||||||| | || || || ||| |||  |||||||||||||| || |||||    
T  1453 tacctgatgagttagcttctggatgagctgcttctggaacctttgaagcaggtcctgcagaagtagctcctgaggcttgctt 1534  T

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Target: scaffold0485 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 46 - 1
Alignment:
Q  28 gagggtggagatggaaggtcaggaatctgattattgatcttagctt 73  Q
    ||||||| |||||||||||||||||||||| ||||||  |||||||    
T  46 gagggtgaagatggaaggtcaggaatctgagtattgacattagctt 1  T

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