View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_26 (Length: 308)
Name: NF10176_low_26
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 26180777 - 26181051
Alignment:
| Q |
1 |
agacgttgacttgaaacttcaattgacaaggacacctataaatatgagctgttattttaacatcaaaatacaagcaatgtatgtgtttatttaagcataa |
100 |
Q |
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| T |
26180777 |
agacattgacttgaaacttcaattgacaaggacgcctataaatatgagctgttattttaacatcaaaatacaagcaatgtatgtgtttatttaagcataa |
26180876 |
T |
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| Q |
101 |
gagatgcactgtcaactattcattttcaacaaatataccatcattgattcactatggccaacgaacaaggtgatatcaagctttccgtgtagactactgg |
200 |
Q |
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| T |
26180877 |
gagatgcactgtcaactattcattttcaacaaata-----------attcactatggccaacgaacaaggtgatatcaagctttccatgtagactactgg |
26180965 |
T |
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| Q |
201 |
atccgtataagctctatgttgaagctcgagaatgttagaggtataatttctggaatgatagactcccaactgacattgccccgtat |
286 |
Q |
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| T |
26180966 |
atccgtataagctctatgttgaagctcgagaatgttagaggtataatttctggaatgatagactcccaactgacattgccccgtat |
26181051 |
T |
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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 1189885 - 1189976
Alignment:
| Q |
1 |
agacgttgacttgaaacttcaattgacaaggacacctataaatatgagct--gttattttaacatcaaaatacaagcaatgtatgtgtttat |
90 |
Q |
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||||||| ||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
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| T |
1189885 |
agacgttaacttgaaacttcaattgaccaggacccctataaatatgaggtatgttattttaacatcaaaatacatgcaatgtatgtgtttat |
1189976 |
T |
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