View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10176_low_31 (Length: 274)

Name: NF10176_low_31
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10176_low_31
NF10176_low_31
[»] chr8 (2 HSPs)
chr8 (173-263)||(33985387-33985477)
chr8 (1-102)||(33985214-33985316)
[»] chr7 (2 HSPs)
chr7 (1-102)||(46269068-46269169)
chr7 (175-238)||(46269235-46269298)
[»] chr2 (3 HSPs)
chr2 (7-102)||(1042820-1042914)
chr2 (7-102)||(1042165-1042259)
chr2 (7-102)||(41553660-41553753)
[»] chr4 (2 HSPs)
chr4 (7-102)||(29897398-29897491)
chr4 (7-102)||(34623242-34623335)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 33985387 - 33985477
Alignment:
Q  173 gaggtcactgctgcaacctcccccttcgccaccgatttatctatccctacctcttgtcatctttctttcattctagctttcttattcatct 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  33985387 gaggtcactgctgcaacctcccccttcgccaccgatttatctatccctacctcttgtcatatttctttcattctagttttcttattcatct 33985477  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 33985214 - 33985316
Alignment:
Q  1 atttgaacacaaaaacaacaccatgggcaactttgtaatttccatttt-aagtgtaaggacaaaaatgaattttcaactgaatatgaaaggcaattctgt 99  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||    
T  33985214 atttgaacacaaatacaacatcatgggcaactttgtaatttccatttttaagtgtaaggacaaagatgaattttcaactgaatatgaagggcaattatgt 33985313  T
Q  100 aaa 102  Q
    |||    
T  33985314 aaa 33985316  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 46269068 - 46269169
Alignment:
Q  1 atttgaacacaaaaacaacaccatgggcaactttgtaatttccattttaagtgtaaggacaaaaatgaattttcaactgaatatgaaaggcaattctgta 100  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  46269068 atttaaacacaaatacaacaccatggacaactttgtaatttccattttaagtgtaaggacaaaaatgaattttcaactgaagatgaagggaaattctgta 46269167  T
Q  101 aa 102  Q
    ||    
T  46269168 aa 46269169  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 46269235 - 46269298
Alignment:
Q  175 ggtcactgctgcaacctcccccttcgccaccgatttatctatccctacctcttgtcatctttct 238  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  46269235 ggtcagtgctacaacctcccccttcgccgccgatttatctatccctacctcatgtcatctttct 46269298  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 1042914 - 1042820
Alignment:
Q  7 acacaaaaacaacaccatgggcaactttgtaatttccattttaagtgtaaggacaaaaatgaattttcaactgaatatgaaaggcaattctgtaaa 102  Q
    ||||||| |||||||||||||||| ||||||||||||| || || || || ||||||| |||||||||| |  || ||||| ||||||||||||||    
T  1042914 acacaaatacaacaccatgggcaattttgtaatttcca-ttaaaatgcaaagacaaaattgaattttcagcacaacatgaagggcaattctgtaaa 1042820  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 1042259 - 1042165
Alignment:
Q  7 acacaaaaacaacaccatgggcaactttgtaatttccattttaagtgtaaggacaaaaatgaattttcaactgaatatgaaaggcaattctgtaaa 102  Q
    ||||||| | |||||||||||||| ||||||||||||| || || || || ||||||| |||||||||| |  || ||||| ||||||||||||||    
T  1042259 acacaaatataacaccatgggcaattttgtaatttcca-ttaaaatgcaaagacaaaattgaattttcagcacaacatgaagggcaattctgtaaa 1042165  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 41553753 - 41553660
Alignment:
Q  7 acacaaaaacaacaccatgggcaactttgtaatttccattttaagtgtaaggacaaaaatgaattttcaactgaatatgaaaggcaattctgtaaa 102  Q
    ||||||| |||||||||| ||||| |||||||||||||  |||| || || ||||||| |||||||||| |  || ||||| ||||||||| ||||    
T  41553753 acacaaatacaacaccataggcaattttgtaatttcca--ttaaatgcaaagacaaaattgaattttcagcacaacatgaagggcaattctataaa 41553660  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 29897398 - 29897491
Alignment:
Q  7 acacaaaaacaacaccatgggcaactttgtaatttccattttaagtgtaaggacaaaaatgaattttcaactgaatatgaaaggcaattctgtaaa 102  Q
    ||||||| |||||||||| ||||| ||||||||||||  ||||| || || ||||||| |||||||||| |  || ||||| ||||||||||||||    
T  29897398 acacaaatacaacaccataggcaattttgtaatttcc--tttaaatgcaaagacaaaattgaattttcagcacaacatgaagggcaattctgtaaa 29897491  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 34623335 - 34623242
Alignment:
Q  7 acacaaaaacaacaccatgggcaactttgtaatttccattttaagtgtaaggacaaaaatgaattttcaactgaatatgaaaggcaattctgtaaa 102  Q
    ||||||| |||||||||| ||||| |||||||||||||  |||| || || ||||||| |||||||||| |  || ||||| ||||||||| ||||    
T  34623335 acacaaatacaacaccataggcaattttgtaatttcca--ttaaatgcaaagacaaaattgaattttcagcacaacatgaagggcaattctataaa 34623242  T

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