View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_36 (Length: 249)
Name: NF10176_low_36
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 47257261 - 47257029
Alignment:
| Q |
1 |
cattcttatgcgtgaaaagaaaggttcccccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttc |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47257261 |
cattcttatgcgtgacaagaaaggttcccccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccgaaattcacttc |
47257162 |
T |
|
| Q |
101 |
tgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47257161 |
tgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatg |
47257062 |
T |
|
| Q |
201 |
tactcctctgtaacttgagcttttgcttttctt |
233 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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|
| T |
47257061 |
tacttctctgtaacttgagcttttgcttttctt |
47257029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 47243134 - 47242902
Alignment:
| Q |
1 |
cattcttatgcgtgaaaagaaaggttcccccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttc |
100 |
Q |
| |
|
|||||||||||| || || | ||||||| |||||| |||||||||||||||||||| || |||||||||| | | |||||||||||| ||||||||||| |
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| T |
47243134 |
cattcttatgcgggacaatataggttcctccaagataagatccaattccaccttttactactccaccatatattgtttcaccccatccgaaattcacttc |
47243035 |
T |
|
| Q |
101 |
tgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatg |
200 |
Q |
| |
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|||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
47243034 |
tgagaaattagcacgagtccaatccgacactatacaagttcttccagttgtaaataaacatcgttccttaataaccataaaatctgctaaagaatgcatg |
47242935 |
T |
|
| Q |
201 |
tactcctctgtaacttgagcttttgcttttctt |
233 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||| |
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|
| T |
47242934 |
tattcctctgtaacttgagtttttgcttttctt |
47242902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 47283956 - 47283771
Alignment:
| Q |
48 |
ccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
147 |
Q |
| |
|
||||||||| | ||||||||||||| || ||||||||||| ||||||||||||| | |||||||||||||| | ||||| || | ||| | |||| | |
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|
| T |
47283956 |
ccaccttttaccactccaccatacaccgcctcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactg |
47283857 |
T |
|
| Q |
148 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttctt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| || |||||||| || ||||||||||||||||||||||||||| |
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|
| T |
47283856 |
ttgtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttctt |
47283771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 47279348 - 47279178
Alignment:
| Q |
63 |
ccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatc |
162 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| | |||||||||||||| | ||||| || | ||| | |||| ||||||||||||||| |
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| T |
47279348 |
ccaccatacaccgcctcaccccatccaaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacaagatcttattgttgtaaataaacatc |
47279249 |
T |
|
| Q |
163 |
gttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttctt |
233 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||| || ||||||||||||||||||||||||||| |
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|
| T |
47279248 |
gttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttctt |
47279178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 47298864 - 47299049
Alignment:
| Q |
48 |
ccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
147 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||| ||||||| | ||||| | ||| | |
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|
| T |
47298864 |
ccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttctgagagcctagcacgagtcaaatctgaaataatacaagaccttacag |
47298963 |
T |
|
| Q |
148 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttctt |
233 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||| || |||||||| ||||||||||||| ||||||| ||||||| |
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|
| T |
47298964 |
ttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttctt |
47299049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 47292257 - 47292442
Alignment:
| Q |
48 |
ccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
147 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| | ||||||||||| ||||||| | | ||| | ||| | |
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|
| T |
47292257 |
ccaccttttgcaactccaccatacaccccttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacag |
47292356 |
T |
|
| Q |
148 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttctt |
233 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||| || |||||||| ||||| ||||||| ||||||| ||||||| |
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|
| T |
47292357 |
ttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttctt |
47292442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 47267991 - 47267806
Alignment:
| Q |
48 |
ccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
147 |
Q |
| |
|
|||| |||||| |||||||||||||| || |||||||||||||||| ||||||| ||||| |||||| |||||| || | ||| | ||| |
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|
| T |
47267991 |
ccactttttgcagctccaccatacacggcctcaccccatccaaaatccacttctcttaactttatacgagttacatctgaaacaacacaagaccttatag |
47267892 |
T |
|
| Q |
148 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtactcctctgtaacttgagcttttgcttttctt |
233 |
Q |
| |
|
||||||||||||| || || ||||||||||||| |||||| | || ||||| || ||||||||||||| ||||||| ||||||| |
|
|
| T |
47267891 |
ttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttctt |
47267806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 32731801 - 32731569
Alignment:
| Q |
1 |
cattcttatgcgtgaaaagaaaggttcccccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccaaaattcacttc |
100 |
Q |
| |
|
|||||||||||| || || | ||||||| |||||| |||||||||||||||||||| || |||||||||||| | |||||||||||| ||||||||||| |
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|
| T |
32731801 |
cattcttatgcgggacaatataggttcctccaagataagatccaattccaccttttactactccaccatacattgtttcaccccatccgaaattcacttc |
32731702 |
T |
|
| Q |
101 |
tgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatg |
200 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| || || |||||| |
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|
| T |
32731701 |
tgataaattagcacgagtccaatctgacaccatacaagttcttccggttgtaaataaacatcgttccttaataaccatacaatctgctaaagaatgcatg |
32731602 |
T |
|
| Q |
201 |
tactcctctgtaacttgagcttttgcttttctt |
233 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||| |
|
|
| T |
32731601 |
tattcctctgtaacttgagtttttgcttttctt |
32731569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 20519759 - 20519682
Alignment:
| Q |
52 |
cttttgctgctccaccatacacagcttcaccccatccaaaattcacttctgagaacttagcacgagtccaatctgaca |
129 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| ||||||||| |
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|
| T |
20519759 |
cttttgcaactccaccatacttcgcctcaccccatccaaaattcacttctctgaacttagcacgtgtcaaatctgaca |
20519682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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