View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10176_low_39 (Length: 235)
Name: NF10176_low_39
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_39 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 11468828 - 11468617
Alignment:
| Q |
17 |
aagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11468828 |
aagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaaca |
11468729 |
T |
|
| Q |
117 |
tgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11468728 |
tgtatacagctttataagttccatggcactcaaatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaa |
11468629 |
T |
|
| Q |
217 |
ttagcctcatct |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11468628 |
ttagcctcatct |
11468617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 11522633 - 11522844
Alignment:
| Q |
17 |
aagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11522633 |
aagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaaca |
11522732 |
T |
|
| Q |
117 |
tgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11522733 |
tgtatacagctttataagttccatggcactcaaatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaa |
11522832 |
T |
|
| Q |
217 |
ttagcctcatct |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11522833 |
ttagcctcatct |
11522844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 11445826 - 11445645
Alignment:
| Q |
47 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
146 |
Q |
| |
|
||||||||| || |||||||| |||||||||| |||||| |||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
11445826 |
aaatggattccagtagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcact |
11445727 |
T |
|
| Q |
147 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
228 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||||||||| |||||||| || |||||| || |||||||||| |||||| |
|
|
| T |
11445726 |
caaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatct |
11445645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 11547264 - 11547445
Alignment:
| Q |
47 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
146 |
Q |
| |
|
||||||||| || |||||||| |||||||||| |||| | |||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
11547264 |
aaatggattccagtagcaatggcagtgaagaaagtcagttttatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcact |
11547363 |
T |
|
| Q |
147 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
228 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||||||||| |||||||| || |||||| || |||||||||| |||||| |
|
|
| T |
11547364 |
caaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatct |
11547445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 11507033 - 11507214
Alignment:
| Q |
47 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
146 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
11507033 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcact |
11507132 |
T |
|
| Q |
147 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
228 |
Q |
| |
|
|||||| || ||||| ||||| |||| |||||||||||| || |||||||| || |||||| || |||||||||| |||||| |
|
|
| T |
11507133 |
caaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatct |
11507214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 34783870 - 34784026
Alignment:
| Q |
72 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaata |
171 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||||||| || |||| ||||| ||| |
|
|
| T |
34783870 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggcactcaaatcagccatggaactaggcata |
34783969 |
T |
|
| Q |
172 |
gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
228 |
Q |
| |
|
| ||||||||||| || |||||||| || |||||| || ||||||||||||||||| |
|
|
| T |
34783970 |
gctgatgcaatccataaccatggaaaaccaatgactctttctgaattagcctcatct |
34784026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 34775649 - 34775805
Alignment:
| Q |
72 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaata |
171 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||| |||||||| || |||| ||||| ||| |
|
|
| T |
34775649 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaactaggcata |
34775748 |
T |
|
| Q |
172 |
gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
228 |
Q |
| |
|
| |||||||| ||||| |||||||| || |||||| || ||||| ||||||||||| |
|
|
| T |
34775749 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatct |
34775805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 1690 - 1871
Alignment:
| Q |
47 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
146 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
1690 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcact |
1789 |
T |
|
| Q |
147 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatct |
228 |
Q |
| |
|
|||||| || ||||| ||||| |||| |||||||||||| || |||||||| || |||||| || |||||||||| |||||| |
|
|
| T |
1790 |
caaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatct |
1871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University