View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_44 (Length: 206)
Name: NF10176_low_44
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 27826254 - 27826082
Alignment:
| Q |
25 |
cctcttgttcttcaacctttcctttccatagcttccttcgaatgctgtatacctacatcaattagaatccaacaaaattaagccatgataccctatgaat |
124 |
Q |
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| T |
27826254 |
cctcttgttcttcaacctttcctttccatagcttccttcgaatgctgtatacctacatcaattagaatccaacaaaattaagccatgataccctatgaat |
27826155 |
T |
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| Q |
125 |
aactcnnnnnnnaaa----attaaaataatatgtttggtgaaaacaccaaaattgactttatggcctatgcta |
193 |
Q |
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| T |
27826154 |
aactctttttttaaaagatataaaaattatatgtttggtgaaaacaccaaaattgactttatggcctatgcta |
27826082 |
T |
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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 27822313 - 27822217
Alignment:
| Q |
27 |
tcttgttcttcaacctttcctttccatagcttccttcgaatgctgtatacctacatcaattagaatccaacaaaattaagccatgataccctatgaat |
124 |
Q |
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| T |
27822313 |
tcttgttcttcaccctttcctgtccacaccttctttccaatgttgtatacctacatcaattagaatccaa-taaattaaaccatgataccctatgaat |
27822217 |
T |
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