View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10176_low_5 (Length: 472)

Name: NF10176_low_5
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10176_low_5
NF10176_low_5
[»] chr8 (12 HSPs)
chr8 (23-462)||(548712-549151)
chr8 (23-262)||(23423477-23423716)
chr8 (286-462)||(23423716-23423892)
chr8 (286-462)||(894464-894640)
chr8 (286-430)||(906003-906147)
chr8 (344-430)||(1963481-1963567)
chr8 (117-217)||(894679-894779)
chr8 (117-217)||(905864-905964)
chr8 (357-407)||(566327-566377)
chr8 (350-430)||(2014862-2014942)
chr8 (350-430)||(2018245-2018325)
chr8 (350-430)||(2436899-2436979)
[»] scaffold0428 (2 HSPs)
scaffold0428 (353-430)||(1348-1425)
scaffold0428 (113-249)||(1138-1274)
[»] chr6 (6 HSPs)
chr6 (349-430)||(845020-845101)
chr6 (349-430)||(870304-870385)
chr6 (353-430)||(33257230-33257307)
chr6 (287-430)||(8294448-8294591)
chr6 (113-249)||(33257020-33257156)
chr6 (113-249)||(8294599-8294735)
[»] scaffold0184 (2 HSPs)
scaffold0184 (353-429)||(15200-15276)
scaffold0184 (100-186)||(11865-11951)
[»] scaffold0078 (2 HSPs)
scaffold0078 (353-429)||(57568-57644)
scaffold0078 (100-186)||(60893-60979)
[»] chr7 (1 HSPs)
chr7 (390-430)||(41511443-41511483)
[»] chr1 (1 HSPs)
chr1 (350-430)||(5906147-5906227)


Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 23 - 462
Target Start/End: Complemental strand, 549151 - 548712
Alignment:
Q  23 ccatcattcaaatagagtcaaaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgg 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  549151 ccatcattcaaagagagtcaaaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgg 549052  T
Q  123 gagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagttccaaataag 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  549051 gagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagaattccaaataag 548952  T
Q  223 cactcaagttctgcttattttagtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatttaccattaggtttcttgg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548951 cactcaagttctgcttattttagtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatttaccattaggtttcttgg 548852  T
Q  323 aaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548851 aaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttg 548752  T
Q  423 gagttcaagtttagagggtttagtttatggtgtgcctatg 462  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  548751 gagttcaagtttagagggtttagtttatggtgtgcctatg 548712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 23423477 - 23423716
Alignment:
Q  23 ccatcattcaaatagagtcaaaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgg 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423477 ccatcattcaaagagagtcaaaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgg 23423576  T
Q  123 gagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagttccaaataag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423577 gagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagttccaaataag 23423676  T
Q  223 cactcaagttctgcttattttagtggatcttcaaaaaagg 262  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  23423677 cactcaaattctgcttattttagtggatcttcaaaaaagg 23423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 286 - 462
Target Start/End: Original strand, 23423716 - 23423892
Alignment:
Q  286 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423716 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 23423815  T
Q  386 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423816 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 23423892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 286 - 462
Target Start/End: Complemental strand, 894640 - 894464
Alignment:
Q  286 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 385  Q
    |||||||||||| |||||||||||   |||||  ||||||| || |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  894640 gatgatccattagattatttaccaagtggttttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 894541  T
Q  386 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 462  Q
    || | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||    
T  894540 atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatg 894464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 430
Target Start/End: Original strand, 906003 - 906147
Alignment:
Q  286 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 385  Q
    |||||||||||| | |||||||||   |||||||||||||| |  |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  906003 gatgatccattagagtatttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 906102  T
Q  386 atagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    || | |||| |||||| ||||||| ||||||||||||| ||||||    
T  906103 atggatcaattggtgggtttttgagtcattgtggttggggttcaa 906147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 1963481 - 1963567
Alignment:
Q  344 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    |||| |||||||||||||| |||||  || |||| |||||||| ||||| | |||||| |||||| ||||||||||||||| |||||    
T  1963481 tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaa 1963567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 894779 - 894679
Alignment:
Q  117 ttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagttcca 216  Q
    |||||||||||||||| || |  ||||||||||| |||||||| |||| |||||  ||||||  ||||||   || || ||||||||| |||||||||||    
T  894779 ttttgggagtggtggaacagtttctcatgaacaactcaatgagttagcatttggactagaattgagtggtaagaaattcttgtgggttgttagagttcca 894680  T
Q  217 a 217  Q
    |    
T  894679 a 894679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 905864 - 905964
Alignment:
Q  117 ttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagttcca 216  Q
    |||||||||||||||| || |  ||||||||||| | |||||| |||| ||||| |||||||  ||||||   || || ||||||||| |||||||||||    
T  905864 ttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggtaaaaagttcttgtgggttgttagagttcca 905963  T
Q  217 a 217  Q
    |    
T  905964 a 905964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 566377 - 566327
Alignment:
Q  357 atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt 407  Q
    |||||| |||||||||||||||||| |||||||||||| || ||| |||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt 566327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 430
Target Start/End: Complemental strand, 2014942 - 2014862
Alignment:
Q  350 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2014942 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2014862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 430
Target Start/End: Complemental strand, 2018325 - 2018245
Alignment:
Q  350 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2018325 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2018245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 2436899 - 2436979
Alignment:
Q  350 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    ||||||||||||| ||||| ||| |||| |||||||| || |||  ||||||||| |||| ||| ||||| |||| |||||    
T  2436899 ttccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaa 2436979  T

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Target: scaffold0428 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 1348 - 1425
Alignment:
Q  353 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  1348 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 1425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 1138 - 1274
Alignment:
Q  113 tctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagt 212  Q
    |||| ||||| ||||||||| ||||| |||| || ||| |||||||| ||||||||||  ||||||  ||||||  ||| || ||||||||| | ||||     
T  1138 tctcctttggaagtggtggaacactctctcaagatcaactcaatgagttagcttttggtctagaattgagtggtcacaagttcttgtgggttgtgagagc 1237  T
Q  213 tccaaataagcactcaagttctgcttattttagtgga 249  Q
    ||||| ||| || || |||||||||||||||| ||||    
T  1238 tccaagtaaacattctagttctgcttattttaatgga 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 845101 - 845020
Alignment:
Q  349 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  845101 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 845020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 870385 - 870304
Alignment:
Q  349 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  870385 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 870304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 33257230 - 33257307
Alignment:
Q  353 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  33257230 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 33257307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 430
Target Start/End: Complemental strand, 8294591 - 8294448
Alignment:
Q  287 atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca 386  Q
    ||||||||||| | |||||||||   ||||| |||||||| || |||||  | ||  | || ||| |||||||||| ||||||||||| |||||| ||||    
T  8294591 atgatccattagagtatttaccaaatggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 8294492  T
Q  387 tagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    | | |||| |||||| ||||| | ||||||||||||||||||||    
T  8294491 tggatcaattggtgggtttttaagtcattgtggttggagttcaa 8294448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 33257020 - 33257156
Alignment:
Q  113 tctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagt 212  Q
    |||| ||||| ||||||||| ||||| |||| || ||| |||||||| ||||||||||  ||||||  ||||||  ||| || ||||||||| | ||||     
T  33257020 tctcctttggaagtggtggaacactctctcaagatcaactcaatgagttagcttttggtctagaattgagtggtcacaagttcttgtgggttgtgagagc 33257119  T
Q  213 tccaaataagcactcaagttctgcttattttagtgga 249  Q
    ||||| ||| || || |||||||||||||||| ||||    
T  33257120 tccaagtaaacattctagttctgcttattttaatgga 33257156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 8294735 - 8294599
Alignment:
Q  113 tctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggttgcaattttttgtgggttattagagt 212  Q
    |||||||||| ||||||||| ||||| |||| || ||| |||| ||| ||||||||||  ||||||  ||||||  ||| || ||||||||| | ||||     
T  8294735 tctcttttggaagtggtggaacactctctcaagatcaactcaacgagttagcttttggtctagaattgagtggtcacaaattcttgtgggttgtgagagc 8294636  T
Q  213 tccaaataagcactcaagttctgcttattttagtgga 249  Q
    ||||| |||  | || |||||||| ||||||||||||    
T  8294635 tccaagtaaaaattctagttctgcctattttagtgga 8294599  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  353 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 429  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 11951 - 11865
Alignment:
Q  100 tctgttttgttcatctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggt 186  Q
    |||||||||||  | || ||||| ||||||||| ||||  |||| |||||| | |||||| ||||||||||||| |||| |||||||    
T  11951 tctgttttgtttgtttcatttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgggttggaattaagtggt 11865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  353 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 429  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

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Target: scaffold0078; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 60893 - 60979
Alignment:
Q  100 tctgttttgttcatctcttttgggagtggtggagcactcactcatgaacaaatcaatgagatagcttttgggttagaatcaagtggt 186  Q
    |||||||||||  | || ||||| ||||||||| ||||  |||| |||||| | |||||| ||||||||||||| |||| |||||||    
T  60893 tctgttttgtttgtttcatttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgggttggaattaagtggt 60979  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 41511443 - 41511483
Alignment:
Q  390 ttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    ||||| |||||| |||||||||||||||||||||| |||||    
T  41511443 ttcaattggtggatttttgactcattgtggttggaattcaa 41511483  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 5906147 - 5906227
Alignment:
Q  350 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 430  Q
    ||||||||||||| || ||  ||||||| |||||||| |  |||  |||||| || |||| ||||||||||||||||||||    
T  5906147 ttccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa 5906227  T

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