View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_6 (Length: 468)
Name: NF10176_low_6
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 454
Target Start/End: Complemental strand, 8517998 - 8517570
Alignment:
| Q |
27 |
atattactcttgtattcccatatcattatttaatgtgagacannnnnnnnn-gttatcatgatattggtacggggtattcatcg------agcaacaact |
119 |
Q |
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| T |
8517998 |
atattactcttgtattcccatatcattatttaatgtgagacattttttttttgttatcatgatattggtatggggtattcatcgtcacttaggaacgact |
8517899 |
T |
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| Q |
120 |
ga--tttttatcgagaaacctatgagatatataaggtgagttttcctcttcaactatannnnnnnncaaatgtatgagttagaaatcgaatctctgacta |
217 |
Q |
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| T |
8517898 |
gaattttttatcgagaaacctataagacatataaggtgagttctcctcttcaactatattttttttcaaatgtatgagttagaaatcgaatctctgacca |
8517799 |
T |
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| Q |
218 |
tgtgtataaggagttctggtctcttatcagttggaccaattcattgtttgttggtatttaacgtgagactttgaatagtaa---cactgacaaatgttca |
314 |
Q |
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| T |
8517798 |
cgtgtataaggagttctagtctctt-----ttggaccaattcattgtttgttggtatttaacgtgagactttgaataataataacactgacaaatgttca |
8517704 |
T |
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| Q |
315 |
tttcttatttgattataaaattgttcatccattgtaccaaannnnnnnnnnnnnnnnnnnnnttgttcatccgattaattaaatgattccctcccctcgt |
414 |
Q |
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| T |
8517703 |
tttcttatttgattataaaattcttcatccattgtaccaaa------aataataataataatttgttcatccgattaattaaatgattccctcccctcgt |
8517610 |
T |
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| Q |
415 |
catggttaaatattgaactgtgtacatcaagtactttctg |
454 |
Q |
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| T |
8517609 |
catggttaaatattgaactgtgtacatcaagtactttctg |
8517570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8518054 - 8518012
Alignment:
| Q |
1 |
atgtgtgttagaaattgagtattcaaatattactcttgtattc |
43 |
Q |
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| T |
8518054 |
atgtgtgttagaaattgagtattcaaatattactcttgtattc |
8518012 |
T |
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