View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10176_low_7 (Length: 446)
Name: NF10176_low_7
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 26 - 435
Target Start/End: Complemental strand, 43411192 - 43410764
Alignment:
| Q |
26 |
gtttggtatgatgctttgttaactaaaactctaattaaacaatatgatgtgtaattaacaaaataaagccgcagaatctaacttaacgagtaattaaatg |
125 |
Q |
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| T |
43411192 |
gtttggtatgatgctttgttaactaaaactctaattaaacaacaagatgtgtaattaacaaaataaagccgcagaatctaacttaacgagtaattaaatg |
43411093 |
T |
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| Q |
126 |
aaaagcagtaaaggtatatgagctaacattgatgttatgtttgcttgggaatttggatgctatacaatatacagacagaca------------caacaca |
213 |
Q |
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| T |
43411092 |
aaaagcagtaaaggtatatgagctaacattgatgttatgtttgcttgggaatttggatgctatacaatatacagacagacagacagacagacacaacaca |
43410993 |
T |
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| Q |
214 |
ttcagatga---gaagttgtaagctagctag----gaggatggactgctgctgctgctgttgcggaaagtgtttggaagattgagaggggaagcttgaaa |
306 |
Q |
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| T |
43410992 |
ttcagatgatcagaagttgtaagctagctagctaggaggatggactgctgctgctgctgttgcggaaagtgtttggaagattgagaggggaagcttgaaa |
43410893 |
T |
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| Q |
307 |
aagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattcttcaagatcagcatcacatgataacacaacccattctccttcatca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410892 |
aagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattcttcaagatcagcatcacatgataacacaacccattctccttcatca |
43410793 |
T |
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| Q |
407 |
tccaaatattttagaaccaagttgttcat |
435 |
Q |
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| T |
43410792 |
tccaaatattttagaaccaagttgttcat |
43410764 |
T |
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