View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10176_low_9 (Length: 428)
Name: NF10176_low_9
Description: NF10176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10176_low_9 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 14416727 - 14417137
Alignment:
| Q |
1 |
ttgggatattggtattgaagaaggccccaaattcaggttactcgagctaccatttttgccatccaaagtaaaacaagccactttgacctgaaaatgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14416727 |
ttgggatattggtattgaagaaggccccaaattcaggttactcgagctaccatttttgtcatccaaagtaaaacaagccactttgacctgaaaatgattc |
14416826 |
T |
|
| Q |
101 |
ttaaaaagtcataaaatcgatgccacaaaaatttgctcaatttatcatgcagaaaataccatagacacccaagaacttgcattcacattatgcttataag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
14416827 |
ttaaaaagtcataaaatcgatgccacaaaaatttgcacaattcatcatgcagaaaatacaatagacacccaagaacttgcattcacaatatgcttataag |
14416926 |
T |
|
| Q |
201 |
aaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagcttatcaactacacctccaaaaacatttgaattaggtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14416927 |
aaaatcaacataaattatgtatcacttgagagaaatacctttaccaatgatgcagcaataagcttatcaactacacctccaaaaacatttgaattaggtt |
14417026 |
T |
|
| Q |
301 |
ccactagagacaccttaaagtaatccattctcttagagccattattgttgtcaaatacttctaacattcctgagagagataaaatctcaaattgaccctg |
400 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14417027 |
ccactagagacaccgtaaagtaattcattctcttaaagccattattgttgtcaaatacttctaacattcctgagagagataaaatctcaaattgaccctg |
14417126 |
T |
|
| Q |
401 |
tgatgaaaaat |
411 |
Q |
| |
|
||||||||||| |
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|
| T |
14417127 |
tgatgaaaaat |
14417137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 14426794 - 14427196
Alignment:
| Q |
14 |
attgaagaaggccccaaattcaggttactcgagctaccatttttgccatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaaagtcata |
113 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||||| |
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|
| T |
14426794 |
attgaagaagaccccaatttcaggttacttgagctacaatttttgccatccaaagtaaaactacccactataacctgaaaatgattcttaaaaagtcata |
14426893 |
T |
|
| Q |
114 |
aaatcgatgccacaaaaatttgctcaatttatcatgcagaaaataccatagacacccaagaacttgcattcacattatgctt----ataagaaaatcaac |
209 |
Q |
| |
|
|| ||| | |||||||| ||||||||||| || |||||||||||| |||||||||||||||||| |||||||||| ||||| | || ||||||||| |
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| T |
14426894 |
aa-tcggtcccacaaaa-tttgctcaattcgtcgtgcagaaaatactatagacacccaagaacttacattcacattttgctttaaaaaaaaaaaatcaac |
14426991 |
T |
|
| Q |
210 |
ataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagcttatca---actacacctccaaaaacatttgaattaggttccacta |
306 |
Q |
| |
|
|||||| || ||||| || |||||||||||||||| || ||||| ||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||| |
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| T |
14426992 |
ataaatcatttatcatttgagagaaatacctttacgaaggatgccgcaataagcttatcagcaactacacctcccaaaacgtttaaattaggatccacta |
14427091 |
T |
|
| Q |
307 |
gagacaccttaaagtaatccattctcttagagccattattgttgtcaaatacttctaacattcctgagagagataaaatctcaaattgaccctgtgatga |
406 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||| |
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|
| T |
14427092 |
aagacaccttaaagtaacccattgtcttaaagccatttttgttgtcaaattcttctaacattcctgatagagataaaatctcaaatcgaccctgtaatga |
14427191 |
T |
|
| Q |
407 |
aaaat |
411 |
Q |
| |
|
||||| |
|
|
| T |
14427192 |
aaaat |
14427196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 4244900 - 4244649
Alignment:
| Q |
18 |
aagaaggccccaaattcaggttactcgagctaccatttttgccatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaaagtcataaaat |
117 |
Q |
| |
|
|||||||||| | |||| |||| |||||||| | ||||| ||| ||||||||||| | |||| ||| ||| ||| |||| ||||||||||||||||| |
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|
| T |
4244900 |
aagaaggcccgactttcaagttattcgagctagccttttttccactcaaagtaaaactacccaccgtgatctgtaaacgattattaaaaagtcataaaat |
4244801 |
T |
|
| Q |
118 |
cgatgccacaaaaatttgctcaatttatcatgcagaaaataccatagacacccaagaacttgcattcacattatgcttataagaaaatcaacataaatta |
217 |
Q |
| |
|
||||| ||||| |||| ||||| |||||||||||| || || ||||||| || || ||||||| | || || ||| |||||||||||||||| |
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|
| T |
4244800 |
tgatgcaacaaag-tttgatcaatccttcatgcagaaaaaactatcaacacccattaagttacattcacgatgtgattttaa-aaaatcaacataaattg |
4244703 |
T |
|
| Q |
218 |
tgtatcactttagagaaatacctttactaatgatgcagcaataagcttatcaac |
271 |
Q |
| |
|
| ||||| | ||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4244702 |
tttatcatatgagaacaatacctttaccaatgatgccgcaataagcttatcaac |
4244649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 410
Target Start/End: Original strand, 3409885 - 3410129
Alignment:
| Q |
168 |
cccaagaacttgcattcacattatgcttataagaaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagcttat |
267 |
Q |
| |
|
||||||||||| ||||||||| | | | ||| |||||||||||||||| | ||||| || | | |||||||||||| | ||||| ||||||||||||| |
|
|
| T |
3409885 |
cccaagaacttaaattcacattgtacat-taaaaaaatcaacataaattgtttatcatttgaaaacaatacctttactgaagatgctgcaataagcttat |
3409983 |
T |
|
| Q |
268 |
ca---actacacctccaaaaacatttgaattaggttccactagagacaccttaaagtaatccattctcttagagccattattgttgtcaaatacttctaa |
364 |
Q |
| |
|
| || |||||||| ||| | ||| ||| |||| |||||||||||||||| | ||||||| ||| | ||| ||||||||||| |||||||||| |
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|
| T |
3409984 |
tagccaccacacctcccaaagggcgtaaatcaggacccaccagagacaccttaaagttacccattcttttacaaccactattgttgtcacatacttctaa |
3410083 |
T |
|
| Q |
365 |
cattcctgagagagataaaatctcaaattgaccctgtgatgaaaaa |
410 |
Q |
| |
|
||| ||||| || |||| || ||||||| ||||||| ||| ||||| |
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|
| T |
3410084 |
catgcctgatagggatacaagctcaaatcgaccctgggataaaaaa |
3410129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 399
Target Start/End: Complemental strand, 4867340 - 4867085
Alignment:
| Q |
148 |
tgcagaaaataccatagacacccaagaacttgcattcacattatgcttataagaaaatcaacataaattatgtatcactttagagaaatacctttactaa |
247 |
Q |
| |
|
|||| ||||||| || |||| ||||||||| |||||||||| | | ||| |||||| ||||||||||| ||||| || ||| |||||||||||||| |
|
|
| T |
4867340 |
tgcaaaaaatacaatcaacacacaagaacttacattcacattgcacatttaa-aaaatctacataaattatctatcatttgagaacaatacctttactaa |
4867242 |
T |
|
| Q |
248 |
tgatgcagcaataagcttat---caactacacctccaaaaacatttgaattaggttccactagagacaccttaaagtaatccattctcttagagccatta |
344 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||| | |||| ||||| ||| | |||||||||||||| |||||| |||||| ||| ||||| |
|
|
| T |
4867241 |
tgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaatcagggtttactagagacaccttgaagtaactcattcttttattgccatag |
4867142 |
T |
|
| Q |
345 |
ttgttgtc--aaatacttctaacattcctgagagagataaaatctcaaattgaccct |
399 |
Q |
| |
|
|||||||| | |||||||||| | ||||| | |||| ||| ||||||||||||| |
|
|
| T |
4867141 |
ttgttgtcagatatacttctaaattgcctgacaaggatacaatttcaaattgaccct |
4867085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 4251466 - 4251292
Alignment:
| Q |
92 |
aaatgattcttaaaaagtcataaaatcgatgccacaaaaatttgctcaatttatcatgcagaaaataccatagacacccaagaacttgcattcacattat |
191 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||| |||| ||||| |||||||||||| || || |||||| || || ||||||| | | |
|
|
| T |
4251466 |
aaatgattcttaaaaagtcataaaattgatgcaac-aaagtttgatcaatccttcatgcagaaaaaactatcaccacccataaagttacattcacgatgt |
4251368 |
T |
|
| Q |
192 |
gcttataagaaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagcttatca |
269 |
Q |
| |
|
|||| || |||||||||||||||| | ||||| || ||| ||||||||||||| ||||| || |||||||||||| |
|
|
| T |
4251367 |
gctttta--aaaatcaacataaattgtatatcatttaagaacgatacctttactaacgatgccgcgataagcttatca |
4251292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 4814171 - 4814069
Alignment:
| Q |
165 |
acacccaagaacttgcattcacattatgcttataagaaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagct |
264 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||| ||| |||| |||||||| | | |||| || |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
4814171 |
acacccaataacttacattcacatagtgcttttaa--aaataaacataaagtgtccatcatttgagagcaatacctttactaatgatgctgcaataagct |
4814074 |
T |
|
| Q |
265 |
tatca |
269 |
Q |
| |
|
||||| |
|
|
| T |
4814073 |
tatca |
4814069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 4867451 - 4867398
Alignment:
| Q |
53 |
tttttgccatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaa |
106 |
Q |
| |
|
|||||||||||||| ||||||| | ||||| ||||||| ||||||||||||||| |
|
|
| T |
4867451 |
tttttgccatccaatgtaaaactacccactatgacctggaaatgattcttaaaa |
4867398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 3409735 - 3409833
Alignment:
| Q |
16 |
tgaagaaggccccaaattcaggttactcgagctaccatttttgccatccaaagtaaaacaagccactttgacctgaaaatgattcttaaaaagtcataa |
114 |
Q |
| |
|
|||||||||||| | |||| |||| |||||||| | || || ||||||||||||||| | |||| ||||||| |||||||| |||| ||||||||| |
|
|
| T |
3409735 |
tgaagaaggcccaattttcaagttattcgagctagccttcttaacatccaaagtaaaactacccacagtgacctgtaaatgatttttaataagtcataa |
3409833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 7159144 - 7159076
Alignment:
| Q |
201 |
aaaatcaacataaattatgtatcactttagagaaatacctttactaatgatgcagcaataagcttatca |
269 |
Q |
| |
|
||||||||||| |||||| ||||| || ||| ||||||||||| |||||||| ||||||||||||||| |
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|
| T |
7159144 |
aaaatcaacatgaattatctatcatttgtgagcaatacctttaccaatgatgctgcaataagcttatca |
7159076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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