View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10177_high_12 (Length: 255)
Name: NF10177_high_12
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_high_12 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 38220713 - 38220940
Alignment:
| Q |
16 |
aaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctcca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38220713 |
aaacctcctttataatctgaccttattgaccttccatattcatcaactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctcca |
38220812 |
T |
|
| Q |
116 |
cgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38220813 |
cgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgg |
38220912 |
T |
|
| Q |
216 |
aatatcagttgccgtccctcgtgtttca |
243 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
38220913 |
aatatcagtcgccgtccctcgtgtttca |
38220940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 38214671 - 38214897
Alignment:
| Q |
16 |
aaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctcca |
115 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
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|
| T |
38214671 |
aaacctccttcataatctgacctaatagaccttccatattcatccactgtaacattataaagctcacacttacactcggtgcaccctaacttatcctctg |
38214770 |
T |
|
| Q |
116 |
cgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgg |
215 |
Q |
| |
|
||||||||||||| ||||||||||| || | || |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38214771 |
cgccgcgcgtatcgatggcatgaacattaaccaaccatttctcctcaaacccttctggaatctcttcaggattacctatctctataccaaaaggatccgg |
38214870 |
T |
|
| Q |
216 |
aatatcagttgccgtccctcgtgtttc |
242 |
Q |
| |
|
|||||| ||||| || ||||||||||| |
|
|
| T |
38214871 |
aatatctgttgctgttcctcgtgtttc |
38214897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 38243562 - 38243787
Alignment:
| Q |
17 |
aacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccac |
116 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||| || |
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|
| T |
38243562 |
aacctcctttataatctggccttatagaccttccatattcatccaccgtaacattataaagctcgcacttacactcagtgcaccctaacttatcctctac |
38243661 |
T |
|
| Q |
117 |
gccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgga |
216 |
Q |
| |
|
||| || ||||||||||||||||| || |||| |||| | ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38243662 |
gccacgtgtatcaatggcatgaacattaagcacccatttatcctcggacccttctgaaacctctgcaggattacctatctctataccaaaaggatccgga |
38243761 |
T |
|
| Q |
217 |
atatcagttgccgtccctcgtgtttc |
242 |
Q |
| |
|
||||| ||||| || ||||||||||| |
|
|
| T |
38243762 |
atatctgttgctgttcctcgtgtttc |
38243787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 38227094 - 38227320
Alignment:
| Q |
16 |
aaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctcca |
115 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |
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|
| T |
38227094 |
aaacctcctttataatctggcccaatagaccttccatattcatccactgtaacattataaaggtcgcacttgcactcagtgcaccctaatttatcctctg |
38227193 |
T |
|
| Q |
116 |
cgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgg |
215 |
Q |
| |
|
|||| |||||||||||||||||||| || |||| |||| | |||||| |||||| |||||||||| |||||||||||||||||||||| |||||||| || |
|
|
| T |
38227194 |
cgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaacccttgtggaatctcttcaggattacctatctctataccgaaaggatctgg |
38227293 |
T |
|
| Q |
216 |
aatatcagttgccgtccctcgtgtttc |
242 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |
|
|
| T |
38227294 |
aatatctgttgtcgttcctcgtgtttc |
38227320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 38238623 - 38238849
Alignment:
| Q |
16 |
aaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctcca |
115 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
38238623 |
aaacctcctttataatctggcctaatagaccttccatattcatccactgtaacattataaagctcacacttacactcagtgcaccctaatttatcctttg |
38238722 |
T |
|
| Q |
116 |
cgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgg |
215 |
Q |
| |
|
||| |||||||| ||||||||||| || |||| |||| | || | | ||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
38238723 |
tgcctcgcgtatcgatggcatgaacattaagcaaccatttttcgtgaaacccttctggaatctcttcaggattgcctatctctataccgaaaggatccgg |
38238822 |
T |
|
| Q |
216 |
aatatcagttgccgtccctcgtgtttc |
242 |
Q |
| |
|
|||||| || ||||| || |||||||| |
|
|
| T |
38238823 |
aatatcggtcgccgttccacgtgtttc |
38238849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 38248709 - 38248935
Alignment:
| Q |
16 |
aaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctcca |
115 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| ||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||| |
|
|
| T |
38248709 |
aaacctcctttataatctggcctaatagattttccatactcatccactgtaacattataaaggtcacacttacattcagtgcaccctaatttatcctctg |
38248808 |
T |
|
| Q |
116 |
cgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgg |
215 |
Q |
| |
|
||| |||||||| ||||||||||| || |||| |||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||| || |
|
|
| T |
38248809 |
tgccacgcgtatcgatggcatgaacattaagcaaccatttctcctcaaacccttctggaatctcttcaggactacctgtctctataccaaaaggatctgg |
38248908 |
T |
|
| Q |
216 |
aatatcagttgccgtccctcgtgtttc |
242 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |
|
|
| T |
38248909 |
aatatctgttgtcgttcctcgtgtttc |
38248935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 38253826 - 38254029
Alignment:
| Q |
18 |
acctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacg |
117 |
Q |
| |
|
||||||||||||||| | ||||| |||||||| || |||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||| | |
|
|
| T |
38253826 |
acctcctttataatcaggccttacagaccttccgtactcatccaccgtaacattataaagctcgcacttacactcggtgcaccctaacttatcctctgca |
38253925 |
T |
|
| Q |
118 |
ccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccggaa |
217 |
Q |
| |
|
|| || ||||| ||||||||||| || | ||||||| |||| ||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
38253926 |
cctcgtgtatcgatggcatgaacattaaccatccatttctcatcaaacccttctggaacctctgcaggattacctacctctataccaaaagggtccggaa |
38254025 |
T |
|
| Q |
218 |
tatc |
221 |
Q |
| |
|
|||| |
|
|
| T |
38254026 |
tatc |
38254029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 17455324 - 17455550
Alignment:
| Q |
16 |
aaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctcca |
115 |
Q |
| |
|
||||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
17455324 |
aaacctcctttataatcagacattaaaggccttccatattcatccactgtaacattataaagctcacacttgcactcagtgcaccctagcttatcctcta |
17455423 |
T |
|
| Q |
116 |
cgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccgg |
215 |
Q |
| |
|
|||| || ||||| |||||||||| || | || |||| |||||||| ||||||||||||| |||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
17455424 |
cgccacgtgtatcgatggcatgaatattaaacaaccatttctcctcaaacccttctggaatttctgttggattacccatctccataccaaaaggatccgg |
17455523 |
T |
|
| Q |
216 |
aatatcagttgccgtccctcgtgtttc |
242 |
Q |
| |
|
|||||| || | || ||||||||||| |
|
|
| T |
17455524 |
aatatcggtcggtgttcctcgtgtttc |
17455550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 17434254 - 17434450
Alignment:
| Q |
46 |
cttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgttta |
145 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||||| || | |
|
|
| T |
17434254 |
cttccatattcatccactgttacattataaagctcacacttgcattcagtgcaccctaacttatcctctacgccacgtgtatcgatggcatgaatattaa |
17434353 |
T |
|
| Q |
146 |
gcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttc |
242 |
Q |
| |
|
|| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| | ||| ||||||||||| |
|
|
| T |
17434354 |
acaaccacttctcctcaaacccttctggaatatctgcaggattacctatctctataccaaaaggatctggaatgtcagtcggcgttcctcgtgtttc |
17434450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 21546773 - 21546676
Alignment:
| Q |
123 |
cgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccggaatat |
220 |
Q |
| |
|
||||||||| |||||||| || | || |||| ||||| ||||||||| |||||| || ||||||||||| | ||||||||| |||| || ||||||| |
|
|
| T |
21546773 |
cgtatcaattgcatgaacattgatcaaccatttctccacatacccttttggaatttcagcaggattaccaacttctataccataagggtctggaatat |
21546676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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