View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10177_high_14 (Length: 246)
Name: NF10177_high_14
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 55984538 - 55984764
Alignment:
| Q |
4 |
tgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaacaaaattttggaagaaactagcag----------caatctagagaaaagg |
93 |
Q |
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| T |
55984538 |
tgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaacaaaattttggaagaaactagcagaatatagcagcaatctagagaaaggg |
55984637 |
T |
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| Q |
94 |
aaatttgtaaaagaaaaaacatcatcataactgtgta-----gcacgagttagtgtattaaagcaattaaaaaacatcattataaatgtatcaatgttat |
188 |
Q |
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| T |
55984638 |
aaatttgtaaaagaaaaaacatcttcataactgtgtattaaagcacgagttagtgtattaaagcaattaaaaaacatcattataaatgtatcaatgttat |
55984737 |
T |
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| Q |
189 |
gcaatataaagttcataaataaaacat |
215 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55984738 |
gcaatataaagttcataaataaaacat |
55984764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 55968398 - 55968349
Alignment:
| Q |
4 |
tgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaa |
53 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55968398 |
tgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaa |
55968349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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