View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10177_high_3 (Length: 388)

Name: NF10177_high_3
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10177_high_3
NF10177_high_3
[»] chr1 (3 HSPs)
chr1 (37-375)||(41939724-41940062)
chr1 (309-368)||(21035651-21035710)
chr1 (70-123)||(21035887-21035940)
[»] chr5 (1 HSPs)
chr5 (70-375)||(22295873-22296172)
[»] chr7 (1 HSPs)
chr7 (162-375)||(36569923-36570136)
[»] chr2 (3 HSPs)
chr2 (208-368)||(41939458-41939618)
chr2 (70-268)||(36259961-36260150)
chr2 (69-123)||(41939328-41939382)
[»] chr8 (2 HSPs)
chr8 (70-127)||(13516969-13517026)
chr8 (70-127)||(13606502-13606559)
[»] chr4 (3 HSPs)
chr4 (291-352)||(19333490-19333551)
chr4 (226-375)||(39300485-39300634)
chr4 (68-109)||(19333276-19333317)


Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 37 - 375
Target Start/End: Original strand, 41939724 - 41940062
Alignment:
Q  37 ggtactagttatgatattgttatattgtatgttagatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaaaagggccaaaacc 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41939724 ggtactagttatgatattgttatattgtatgttagatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaaaagggccaaaacc 41939823  T
Q  137 agcatcatcttcatcaatgctgaaactaccatgttactgttgtgctgagggttgcagaaacaatataaactatccaagggcaagaccactgaaagatttc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41939824 agcatcatcttcatcaatgctgaaactaccatgttactgttgtgctgagggttgcagaaacaatataaactatccaagggcaagaccactgaaagatttc 41939923  T
Q  237 agaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagacatttgctgtgagaggagattggaggactc 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41939924 agaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagacatttgctgtgagaggagattggaggactc 41940023  T
Q  337 atgagaagaattgtgggaagctttggttttgtatctgtg 375  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41940024 atgagaagaattgtgggaagctttggttttgtatctgtg 41940062  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 21035710 - 21035651
Alignment:
Q  309 tttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgt 368  Q
    |||||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  21035710 tttgctgttagaggagattggagaactcatgagaagaattgtggaaagctttggtattgt 21035651  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 21035940 - 21035887
Alignment:
Q  70 agatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaa 123  Q
    ||||||||||||||||||||||||| ||||| || |||||||| || |||||||    
T  21035940 agatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaa 21035887  T

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Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 70 - 375
Target Start/End: Complemental strand, 22296172 - 22295873
Alignment:
Q  70 agatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaaaagggccaaaaccagcatcatcttcatcaatgctgaaactaccatg 169  Q
    ||||||||||||||||||||||||| ||||| || |||||||| || ||||||| |||   |||||||||      |||||||||| | | ||| || ||    
T  22296172 agatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagc------ttcatcaatgttaagacttccttg 22296079  T
Q  170 ttactgttgtgctgagggttgcagaaacaatataaactatccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcac 269  Q
     || || ||||| ||||| ||||  ||||| ||| |  |||||||| |||| ||||| || ||||||||||| |||||||||||||||||||| |||||     
T  22296078 ctattgctgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcat 22295979  T
Q  270 ggagggaaatcattcgagtgcagaaagtgtaggaagacatttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgta 369  Q
    ||||  ||  |||| | ||| ||||||||| ||||  ||||||| || ||||| || ||||| || |||||||| || ||||| ||||||||||||||||    
T  22295978 ggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgta 22295879  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 375
Target Start/End: Original strand, 36569923 - 36570136
Alignment:
Q  162 ctaccatgttactgttgtgctgagggttgcagaaacaatataaactatccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaaga 261  Q
    ||||| ||||||||||||||    || ||||||||||| ||  |  ||||||| ||||  || || |||||||| ||||| ||||||||||| |||||||    
T  36569923 ctaccttgttactgttgtgcaccagggtgcagaaacaacattgatcatccaagagcaaagcctctcaaagattttagaacacttcaaacacattacaaga 36570022  T
Q  262 gaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagacatttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttg 361  Q
    |||| || |||   ||  |||||  ||| ||||| || || ||| | |||||||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  36570023 gaaaacatggaattaagccattcatgtgtagaaaatgcagcaaggcttttgctgttagaggagattggagaactcatgaaaagaattgtggaaagctttg 36570122  T
Q  362 gttttgtatctgtg 375  Q
    || |||||||||||    
T  36570123 gtattgtatctgtg 36570136  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 368
Target Start/End: Original strand, 41939458 - 41939618
Alignment:
Q  208 atccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagac 307  Q
    ||||||| |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| |||   ||  ||||   ||| ||||||||| | ||  |    
T  41939458 atccaagagcaaaaccactgaaagattttagaacacttcaaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagc 41939557  T
Q  308 atttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgt 368  Q
    |||||| || ||||| || ||||| ||||| ||||| || |||||||| ||||||| ||||    
T  41939558 atttgcagtaagaggtgactggagaactcacgagaaaaactgtgggaaactttggtattgt 41939618  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 36260150 - 36259961
Alignment:
Q  70 agatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaaaagggccaaaaccagcatcatcttcatcaatgctgaaactaccatg 169  Q
    |||||||||||||||| ||||||||  ||| |||||||||||| || || || |||||  || |||||||| ||         ||||| | |||||||||    
T  36260150 agatgcatatgtgggggcatggatcagaatttaggaaaggaccagactcacttaaaggaacacaaccagcagca---------atgctaagactaccatg 36260060  T
Q  170 ttactgttgtgctgagggttgcagaaacaatataaactatccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagca 268  Q
    ||| ||||||||| | |||||||  ||||| || ||  ||||||| |||| |||| |||| ||||||||||| || ||||| || ||||| ||||||||    
T  36260059 ttattgttgtgctcacggttgcaagaacaacatcaatcatccaagagcaaaaccattgaaggatttcagaactctccaaactcattacaaaagaaagca 36259961  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 41939328 - 41939382
Alignment:
Q  69 tagatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaa 123  Q
    |||||||||||||||||||||||||| |||||||| || ||||| || |||||||    
T  41939328 tagatgcatatgtggggacatggatcacaatatagaaagggaccagaatctctaa 41939382  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 13517026 - 13516969
Alignment:
Q  70 agatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaaaagg 127  Q
    ||||||||||||||||||||||||||||||| || || || || || |||||||||||    
T  13517026 agatgcatatgtggggacatggatctcaatacagaaaggggccagattctctaaaagg 13516969  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 13606559 - 13606502
Alignment:
Q  70 agatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaaaagg 127  Q
    ||||||||||||||||||||||||||||||| || || || || || |||||||||||    
T  13606559 agatgcatatgtggggacatggatctcaatacagaaaggggccagattctctaaaagg 13606502  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 19333490 - 19333551
Alignment:
Q  291 agaaagtgtaggaagacatttgctgtgagaggagattggaggactcatgagaagaattgtgg 352  Q
    ||||| ||| |||| ||||||||||| | ||| ||||||||||||||||| |||||||||||    
T  19333490 agaaaatgtgggaaaacatttgctgtcaaaggtgattggaggactcatgaaaagaattgtgg 19333551  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 39300485 - 39300634
Alignment:
Q  226 tgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagacatttgctgtgagaggaga 325  Q
    |||| ||||||||||| || || |||||||||||||| ||||| ||    ||| |||||   ||  |||| ||| ||||| |||| || |||| ||| ||    
T  39300485 tgaaggatttcagaacactgcagacacactacaagaggaagcatggttcaaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtga 39300584  T
Q  326 ttggaggactcatgagaagaattgtgggaagctttggttttgtatctgtg 375  Q
    |||||| ||||||||||| || ||||| |||| |||| ||||||||||||    
T  39300585 ttggagaactcatgagaaaaactgtggcaagcgttggctttgtatctgtg 39300634  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 19333276 - 19333317
Alignment:
Q  68 ttagatgcatatgtggggacatggatctcaatataggaaagg 109  Q
    |||||||||||||||||| ||||||||| ||| |||||||||    
T  19333276 ttagatgcatatgtgggggcatggatctgaatttaggaaagg 19333317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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