View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10177_high_5 (Length: 364)
Name: NF10177_high_5
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_high_5 |
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| [»] scaffold0785 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 25564756 - 25564487
Alignment:
| Q |
18 |
tattattaaagttttctactccttactttgaagttcttgttctgctcacataactgacttagttcctcatgtatttcctttattttgtacatatcacttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25564756 |
tattattaaagttttctactccttactttgaagttcttgttctgctcacataactgacttagttcctcatgtatttcctttattttgtacatatcacttg |
25564657 |
T |
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| Q |
118 |
atcgatggtgtacttgtatgaagaataggtttgatagatgacacttgcttcattcttgcataattcttcttactcctcagtcctcacaaaacataaacca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25564656 |
atcgatggtgtacttgtatgaagaataggtttgatagatgacacttgcttcattcttgcataattcttcttactcctcagtcctcacaaaacataaacca |
25564557 |
T |
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| Q |
218 |
gcacaaagtcacaaacacttaaatgtgnnnnnnnnnngttgaaggaaaacacttaaatgtgtcattcagt |
287 |
Q |
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| T |
25564556 |
gcacaaagtcacaaacacttaaatgtgtttttttttttttgaaggaaaacacttaaatgtgtcattcagt |
25564487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 25670531 - 25670422
Alignment:
| Q |
81 |
tcctcatgtatttcctttattttgtacatatcacttgatcgatggtgtacttgtatg---------aagaataggtttgatagatgacacttgcttcatt |
171 |
Q |
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||||||||||||||| |||||||||| |||| ||||| | ||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
25670531 |
tcctcatgtatttccattattttgtaaatataacttggtagatggtgtacttgtatgcaatgtttgaaaaataggtttgatagatggcacttgcttcatt |
25670432 |
T |
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| Q |
172 |
cttgcataat |
181 |
Q |
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|||||||||| |
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| T |
25670431 |
cttgcataat |
25670422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 25830042 - 25829828
Alignment:
| Q |
48 |
aagttcttgttctgctcacataactgacttagttcctcatgtatttcctttattttgtacatatcacttgatcgatggtgtacttgtatg---------a |
138 |
Q |
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| T |
25830042 |
aagttcttgttctgctctcatag-tggctcaactcctcttgtatttccattattttgtaaatacaacttggtagatggtgtatttgtatgcaatgtttga |
25829944 |
T |
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| Q |
139 |
agaataggtttgatagatgacacttgcttcattcttgcataat-------------tcttcttactcctcagtcctcacaaaacataaaccagcacaaag |
225 |
Q |
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| T |
25829943 |
aaaataggtttgatatatggcacttgcttcattcttgcataataggacaataattttcttcttcctcctcagtcctcacaaaacataaacccacacaaag |
25829844 |
T |
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| Q |
226 |
tcacaaacacttaaat |
241 |
Q |
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||||| |||| |||| |
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| T |
25829843 |
ccacaagcactaaaat |
25829828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 25670399 - 25670356
Alignment:
| Q |
198 |
tcctcacaaaacataaaccagcacaaagtcacaaacacttaaat |
241 |
Q |
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| T |
25670399 |
tcctcacaaaacataaacccacacaaagtcacaaacacttaaat |
25670356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 354
Target Start/End: Complemental strand, 25564451 - 25564420
Alignment:
| Q |
323 |
ttatcaagtctttcgaatcatttacttctctg |
354 |
Q |
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| T |
25564451 |
ttatcaagtctttcgaatcatttacttctctg |
25564420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 25638555 - 25638520
Alignment:
| Q |
198 |
tcctcacaaaacataaaccagcacaaagtcacaaac |
233 |
Q |
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| T |
25638555 |
tcctcacaaaacgtaaaccagcacaaagtcacaaac |
25638520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 25473083 - 25472995
Alignment:
| Q |
48 |
aagttcttgttctgctcacataactgacttagttcctcatgtatttcctttattttgtacatatcacttgatcgatggtgtacttgtatg |
137 |
Q |
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||||||||||||||||| |||| || || | ||||| ||||||||| |||||||||| ||| ||||| | ||||||||||||||||| |
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| T |
25473083 |
aagttcttgttctgctctcatag-tggctcaactcctcttgtatttccattattttgtaaatacaacttgttagatggtgtacttgtatg |
25472995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 25638657 - 25638620
Alignment:
| Q |
74 |
acttagttcctcatgtatttcctttattttgtacatat |
111 |
Q |
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| T |
25638657 |
acttagtccctcatgtatttccattattttgtacatat |
25638620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0785 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0785
Description:
Target: scaffold0785; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 4287 - 4330
Alignment:
| Q |
198 |
tcctcacaaaacataaaccagcacaaagtcacaaacacttaaat |
241 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4287 |
tcctcacaaaacgtaaaccagcacaaagtcacaaacacttaaat |
4330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0785; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 4193 - 4230
Alignment:
| Q |
74 |
acttagttcctcatgtatttcctttattttgtacatat |
111 |
Q |
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| T |
4193 |
acttagttcctcatgtatttccattattttgtacatat |
4230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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