View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10177_high_7 (Length: 277)
Name: NF10177_high_7
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 45851451 - 45851693
Alignment:
| Q |
16 |
agggggttgtatcaataatcaataatcatgacaaatacgaattatttcatttggacaattatagtatgtatatggcaggaactttggataatgccgcatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45851451 |
agggggttgtatcaataatcaataatcatgacaaatacgaattatttcatttggacaattatagtat----atggcaggaactttggataatgccgcatt |
45851546 |
T |
|
| Q |
116 |
aatccctctaatgcttttgcttaattagtgaggcccataagcatatttggctttattgtttgtcataatctgacaatacacacatctttgcgatatatac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45851547 |
aatccctctaatgcttttgcttaattagtgaggcccataagcatatttggctttattgtttgtcataatctgacaatacacacatctttgcgatatatac |
45851646 |
T |
|
| Q |
216 |
attatgaagcttccaaagtggagcaattcaacaagccacattgtttt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45851647 |
attatgaagcttccaaagtggagcaattcaacaagccacattgtttt |
45851693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University