View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10177_low_1 (Length: 468)
Name: NF10177_low_1
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 452
Target Start/End: Original strand, 5325495 - 5325942
Alignment:
| Q |
4 |
ggagaagcagagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttccttcttcctcaagatcagtgttcaaca |
103 |
Q |
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| T |
5325495 |
ggagaagcaaagagaacactatcagcttcaagaatcttatgacgaaatgcttcaacttcagcaggaaaagttccttctttctcaagatcagtgttcaaca |
5325594 |
T |
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| Q |
104 |
ttggcaagtctgaaatatcgatgtactcgatttggataccatcaagaacacttttgcttagctcaatagctacccatgaatagaaaggaaaaaatgtaaa |
203 |
Q |
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| T |
5325595 |
ttggcaagtttgaaagatcaatgtactcgatttggataccatcaataacacttttgcttagctcaatagctacccatcaataggaa--aaaatatatgaa |
5325692 |
T |
|
| Q |
204 |
accatcaaatttgttattcaaagactcaaaaatcaaaggttaatttatctacttatgtcaaatcgtcctgccaccgtccgattttttcaacaagttaaac |
303 |
Q |
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|||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5325693 |
accatcaaatttattattcaaagactgaaaattcaaaggttaatttatctacttatgtcaaatcgtcctgccaccgtccgattttttcaacaagttcaac |
5325792 |
T |
|
| Q |
304 |
gacaggttaattttgagtttaataggccgacccgacatgttaattccaacttttacatcctaaaattgcgggtttaataagccggcccaatatgctcgac |
403 |
Q |
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|||||||||||||||||||||||||||||||| | || |||||||||||||||| ||||||| |||||| ||||||||| |||||||| | |||||||| |
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| T |
5325793 |
gacaggttaattttgagtttaataggccgacctgtcaggttaattccaacttttccatcctataattgcaggtttaataggccggcccgacctgctcgac |
5325892 |
T |
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| Q |
404 |
ctattttacca-ccttacttagtgtctcccctccccctaaacaatattca |
452 |
Q |
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| T |
5325893 |
ctattttgccacccctacttagtgtctcccctccccctaaacaatattca |
5325942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 5351625 - 5351451
Alignment:
| Q |
4 |
ggagaagcagagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttccttcttcctcaagatcagtgttcaaca |
103 |
Q |
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||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||| ||| |||||||||||||||| |
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| T |
5351625 |
ggagaagcaaagagaacactatcagcagcaagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaaca |
5351526 |
T |
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| Q |
104 |
ttggcaagtctgaaatatcgatgtactcgatttggataccatcaagaacacttttgcttagctcaatagctaccc |
178 |
Q |
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| T |
5351525 |
ttggtaaagttgaaatatcaatgtactcaatatcaacaccctcaaccacatttttgctcagctcaatcgctaccc |
5351451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 5343840 - 5343741
Alignment:
| Q |
4 |
ggagaagcagagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttccttcttcctcaagatcagtgttcaaca |
103 |
Q |
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||||||||| |||||| |||||||||| |||||||||||| ||||| | |||||||||| ||||| |||| ||||||| |||||||||||||||||||| |
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| T |
5343840 |
ggagaagcaaagagaaagctatcagctccaagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaaca |
5343741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 5339439 - 5339545
Alignment:
| Q |
4 |
ggagaagcagagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttccttcttcctcaagatcagtgttcaaca |
103 |
Q |
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||||||||| | |||| |||||||||| ||||||| | | |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
5339439 |
ggagaagcaaatagaaagctatcagctccaagaatataatcacgaaaatcttcaacttcaagaggaaaagtcccttcttcctcaagatcagtgttcaaca |
5339538 |
T |
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| Q |
104 |
ttggcaa |
110 |
Q |
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|||||| |
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| T |
5339539 |
atggcaa |
5339545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 14536675 - 14536769
Alignment:
| Q |
4 |
ggagaagcagagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttccttcttcctcaagatcagtgtt |
98 |
Q |
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||||||||| | ||||| ||||||||| ||||||||| || ||||| |||||||| || |||| |||||||||| | ||||||||||||||| |
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| T |
14536675 |
ggagaagcaaaaagaacactatcagcttgaagaatcttgtggcgaaaagcttcaacaagaggtggataagttccttcattctcaagatcagtgtt |
14536769 |
T |
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