View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10177_low_11 (Length: 275)
Name: NF10177_low_11
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 1614332 - 1614579
Alignment:
| Q |
14 |
actaatttggaatttgcggctgtgactata--tataattaaatgagaatgttgagttggcttaagttgtgtatttgtttcatattcatgcataatattgt |
111 |
Q |
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| T |
1614332 |
actaatttggaatttgcggctgtgactatatatataattaaatgagaatgttgagttggcttaagttgtgtatttgtttcatattcatgcataatattgt |
1614431 |
T |
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| Q |
112 |
taaagaaaattgaatatattatccttttttattaagaagacttattttagggtggggtgaaggatagtttctttgaacatagtaaccaaattcacctggt |
211 |
Q |
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| T |
1614432 |
taaagaaaattgaatatattatccttttttattaagaagacttattttagggtggggtgaagaatagtttctttgaacatagtaaccaaattcacctggt |
1614531 |
T |
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| Q |
212 |
agggttttgtgagcattttgttcaagcatatagaagaaattttcttgt |
259 |
Q |
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| T |
1614532 |
agggttttgtgagcattttgttcaagcatatagaagaaattttattgt |
1614579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 10818245 - 10817999
Alignment:
| Q |
13 |
cactaatttggaatttgcggctgtgactatatata-------attaa-------atgagaatgttgagttggcttaagttgtgtatttgtttcatattca |
98 |
Q |
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| T |
10818245 |
cactaatttggaatttgcggctgtgactatatatataattaaattaatatgttgatgagaatgttgagttggcttaagttgtgtgtttgtttcatatgca |
10818146 |
T |
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| Q |
99 |
tgcataatattgttaaagaaaattgaatatattatccttttttattaagaagacttattttagggtggggtgaaggatagtttctttgaacatagtaacc |
198 |
Q |
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| T |
10818145 |
tgcataatattgttaaagaaaattgaatatattatccttttt-attaagaagacttattttagggtgggatgaattatagtttctttgaacatagtaacc |
10818047 |
T |
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| Q |
199 |
aaattcacctggtagggttttgtgagcattttgttcaagcatatagaa |
246 |
Q |
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| T |
10818046 |
aaattcacctggtagggttttgtgagcattttgttcaagcatatagaa |
10817999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 1608855 - 1609103
Alignment:
| Q |
13 |
cactaatttggaatttgcggctgtgactatatata-----attaaatgagaatgttgagttggcttaagttgtgtatttgtttcatattcatgcataata |
107 |
Q |
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| T |
1608855 |
cactaatttggattttgcggctgtgactatatatatataaattaaattaatatgttgagttggct-aagttgtgtgtttatttcatatgcatgcataatg |
1608953 |
T |
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| Q |
108 |
ttgttaaagaaaattgaatatattatccttttttattaagaagacttattttagggtggggtgaaggatagtttctttgaacatagtaaccaaattcacc |
207 |
Q |
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| T |
1608954 |
ttgttaaa-aaaattgaatatattatcctttt-tattaagaagacttattttagggtggggtgaaggatagttgctttgaacatagtaacctaattcacc |
1609051 |
T |
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| Q |
208 |
tggtagggttttgtgagcattttgttcaagcatatagaagaaattttcttgt |
259 |
Q |
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| T |
1609052 |
tggtagggttttgtgagcgttttgttcaagcatatagaagaaattttattgt |
1609103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 53 - 254
Target Start/End: Original strand, 1632397 - 1632582
Alignment:
| Q |
53 |
atgagaatgttgagttggcttaagttgtgtatttgtttcatattcatgcataatattgttaaagaaaattgaatatattatccttttttattaagaagac |
152 |
Q |
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| T |
1632397 |
atgagaatgttgagttggct-aagttgtgtgtttatttcatatgcatgcataatgttgttaaagaaaattgaatatattatcctttttg----------- |
1632484 |
T |
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| Q |
153 |
ttattttagggtggggtgaaggatagtttctttgaacatagtaaccaaattcacctggtagggttttgtgagcattttgttcaagcatatagaagaaatt |
252 |
Q |
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| T |
1632485 |
----tttagggtggggtgaaggatagtttctttgaacattgtaaccaaattcacctggtagggttttgtgagcgttttgttcaagcatataggtgaaatt |
1632580 |
T |
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