View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10177_low_19 (Length: 246)
Name: NF10177_low_19
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33612516 - 33612275
Alignment:
| Q |
1 |
tagaacttgtgcaaaacaatacgtagggaaaattatttatttaatagatttatataaaacatttatatcaattaggatctttataaacaatccaattcaa |
100 |
Q |
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| T |
33612516 |
tagaacttgtgcaaaacaatacgtagggaaaattatttatttaatagatttatataaaacatttatatcaattaggatctttataaacaatccaattcaa |
33612417 |
T |
|
| Q |
101 |
gttgatttaaattgcaataagggatctgaaaagcaaaaaatggaacgatccacagtttgttcactcatgttcaatctatggaaaccatttttatgtgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33612416 |
gttgatttaaattgcaataagggatctgaaaagcaaaaaatggaacgatccacagtttgttcactcatgttcaatccatggaaaccatttttatgtgtga |
33612317 |
T |
|
| Q |
201 |
ttgtttcatatggttgctgcttctttttaggttgttcatctc |
242 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33612316 |
ttgtttcatatggttgctgcttgtttttaggttgttcatctc |
33612275 |
T |
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