View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10177_low_2 (Length: 405)
Name: NF10177_low_2
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 31808830 - 31809061
Alignment:
| Q |
20 |
caatactcaacaacagaaaggacagtctaaaaatacaaaaattccaatttaaattgacagcaagaattcaaaattctacagctcagatttggtttcagtg |
119 |
Q |
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| T |
31808830 |
caatactcaacaacaaaaaggacagtctaaaaatacaaaaattccaatttaaattgacagcaagaattcaaaattctacagctcagattttgtttcagtg |
31808929 |
T |
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| Q |
120 |
catgtgtgtgagagtgaataattttgcgtaaaaagggtctgtgaaatataacatggtgtgttactgaacttccgtgaataactgaaaatttatccaaaca |
219 |
Q |
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| T |
31808930 |
catgtgtgtgagagtgaataattttgcgtaaaaagggtctgtgaaatataacatggtgtgttactgaacttccgtgaataactgaaaatttatccaaaca |
31809029 |
T |
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| Q |
220 |
aagaatggatataaaaaagggattatgatacc |
251 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31809030 |
aagaatggatataaaaaagggattatgatacc |
31809061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 31809134 - 31809204
Alignment:
| Q |
325 |
gtgtgtgacagaaaaagatgacctcattaaaaattaaaagcattgattttctttacactttctctcctatg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809134 |
gtgtgtgacagaaaaagatgacctcattaaaaattaaaagcattgattttctttacactttctctcctatg |
31809204 |
T |
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