View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10177_low_23 (Length: 228)

Name: NF10177_low_23
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10177_low_23
NF10177_low_23
[»] chr7 (3 HSPs)
chr7 (1-179)||(45851238-45851416)
chr7 (159-196)||(38861096-38861133)
chr7 (156-196)||(25192918-25192958)
[»] chr6 (2 HSPs)
chr6 (157-206)||(1156719-1156768)
chr6 (154-183)||(8505821-8505850)
[»] chr5 (6 HSPs)
chr5 (159-200)||(15479469-15479510)
chr5 (150-183)||(35075623-35075656)
chr5 (157-200)||(13168533-13168576)
chr5 (161-206)||(54705-54751)
chr5 (158-200)||(33037519-33037561)
chr5 (157-198)||(7076423-7076464)
[»] chr3 (6 HSPs)
chr3 (159-200)||(52254168-52254209)
chr3 (159-206)||(7668211-7668258)
chr3 (156-206)||(38359329-38359380)
chr3 (160-206)||(55151740-55151786)
chr3 (156-188)||(19148999-19149031)
chr3 (158-206)||(20548014-20548062)
[»] chr4 (6 HSPs)
chr4 (159-206)||(39440484-39440531)
chr4 (156-203)||(43174981-43175028)
chr4 (157-206)||(37297047-37297096)
chr4 (158-206)||(38510795-38510844)
chr4 (159-196)||(46634100-46634137)
chr4 (158-206)||(45082980-45083028)
[»] chr2 (4 HSPs)
chr2 (159-206)||(3838904-3838951)
chr2 (158-196)||(9207589-9207627)
chr2 (156-189)||(18846611-18846644)
chr2 (156-196)||(17388629-17388669)
[»] chr1 (5 HSPs)
chr1 (157-196)||(35369698-35369737)
chr1 (158-196)||(45333569-45333607)
chr1 (155-196)||(2571631-2571672)
chr1 (156-196)||(8350230-8350270)
chr1 (157-189)||(12657220-12657252)
[»] chr8 (2 HSPs)
chr8 (159-196)||(32501230-32501267)
chr8 (156-188)||(10692436-10692468)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 45851416 - 45851238
Alignment:
Q  1 atttaactccaacagtgtatgtgagagggacaagatagattagtattttattgtttggtttatccattttaaatgctaatgggagaatttatattttaaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45851416 atttaactccaacggtgtatgtgagagggacaagatagattagtattttattgtttggtttatccattttaaatgctaatgggagaatttatattttaaa 45851317  T
Q  101 atggatacgcactattaatataaaatagttttacacttatatttagtgattactcaaagagaaatgatatttgaacaat 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45851316 atggatacgcactattaatataaaatagttttacacttatatttagtgattactcaaagagaaatgatatttgaacaat 45851238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 38861096 - 38861133
Alignment:
Q  159 gagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  38861096 gagaaatgatatttgaacaatcattttttacaactttt 38861133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 25192958 - 25192918
Alignment:
Q  156 aaagagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    ||||||||||||||||||||||| |||| ||||| ||||||    
T  25192958 aaagagaaatgatatttgaacaaccattttttacaactttt 25192918  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 1156719 - 1156768
Alignment:
Q  157 aagagaaatgatatttgaacaatcattgtttaccacttttatgataattt 206  Q
    |||||||||||||||||||||| |||| ||||| |||||| |||||||||    
T  1156719 aagagaaatgatatttgaacaaccattttttacaacttttgtgataattt 1156768  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 8505850 - 8505821
Alignment:
Q  154 tcaaagagaaatgatatttgaacaatcatt 183  Q
    ||||||||||||||||||||||||||||||    
T  8505850 tcaaagagaaatgatatttgaacaatcatt 8505821  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 15479469 - 15479510
Alignment:
Q  159 gagaaatgatatttgaacaatcattgtttaccacttttatga 200  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  15479469 gagaaatgatatttgaacaatcattttttacaacttttatga 15479510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 35075656 - 35075623
Alignment:
Q  150 ttactcaaagagaaatgatatttgaacaatcatt 183  Q
    ||||||||||||||||||||||||||||||||||    
T  35075656 ttactcaaagagaaatgatatttgaacaatcatt 35075623  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 13168533 - 13168576
Alignment:
Q  157 aagagaaatgatatttgaacaatcattgtttaccacttttatga 200  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  13168533 aagagaaatgatatttgaaaaatcattttttacaacttttatga 13168576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 54705 - 54751
Alignment:
Q  161 gaaatgatatttgaacaatcattgttt-accacttttatgataattt 206  Q
    ||||||||||||||||||||||| ||| || ||||||||||||||||    
T  54705 gaaatgatatttgaacaatcattttttgacaacttttatgataattt 54751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 33037519 - 33037561
Alignment:
Q  158 agagaaatgatatttgaacaatcattgtttaccacttttatga 200  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||    
T  33037519 agagaaatgatatttgaacaaccattttttacaacttttatga 33037561  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 7076423 - 7076464
Alignment:
Q  157 aagagaaatgatatttgaacaatcattgtttaccacttttat 198  Q
    |||||||||||||||||||||| |||| ||||| ||||||||    
T  7076423 aagagaaatgatatttgaacaaccattttttacaacttttat 7076464  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 52254209 - 52254168
Alignment:
Q  159 gagaaatgatatttgaacaatcattgtttaccacttttatga 200  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  52254209 gagaaatgatatttgaacaaccattgtttacaacttttatga 52254168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 7668258 - 7668211
Alignment:
Q  159 gagaaatgatatttgaacaatcattgtttaccacttttatgataattt 206  Q
    ||||||||||||||||||||||||| ||||| |||||| ||| |||||    
T  7668258 gagaaatgatatttgaacaatcattttttacaacttttttgacaattt 7668211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 38359380 - 38359329
Alignment:
Q  156 aaagagaaatgatatttgaacaatcattgttt-accacttttatgataattt 206  Q
    |||||||||||||||||| ||||||||| ||| || ||||||||||||||||    
T  38359380 aaagagaaatgatatttgtacaatcattttttaacaacttttatgataattt 38359329  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 55151786 - 55151740
Alignment:
Q  160 agaaatgatatttgaacaatcattgtttaccacttttatgataattt 206  Q
    ||||||||||||||||||| |||| || || ||||||||||||||||    
T  55151786 agaaatgatatttgaacaaccatttttgacaacttttatgataattt 55151740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 19148999 - 19149031
Alignment:
Q  156 aaagagaaatgatatttgaacaatcattgttta 188  Q
    |||||||||||||||||||||||||||| ||||    
T  19148999 aaagagaaatgatatttgaacaatcatttttta 19149031  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 20548062 - 20548014
Alignment:
Q  158 agagaaatgatatttgaacaatcattgtttaccacttttatgataattt 206  Q
    |||||||||||||||||||||||| | ||||| |||||| ||| |||||    
T  20548062 agagaaatgatatttgaacaatcagtttttacaacttttgtgacaattt 20548014  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 39440484 - 39440531
Alignment:
Q  159 gagaaatgatatttgaacaatcattgtttaccacttttatgataattt 206  Q
    |||||||||||||||||||| |||| ||||| |||||| |||||||||    
T  39440484 gagaaatgatatttgaacaaccattttttacaacttttgtgataattt 39440531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 43174981 - 43175028
Alignment:
Q  156 aaagagaaatgatatttgaacaatcattgtttaccacttttatgataa 203  Q
    ||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  43174981 aaagagaaatgatatttgaacaaccattttttacaacttttgtgataa 43175028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 37297047 - 37297096
Alignment:
Q  157 aagagaaatgatatttgaacaatcattgtttaccacttttatgataattt 206  Q
    |||||||||||||||||||||| |||| ||||| |||||| ||| |||||    
T  37297047 aagagaaatgatatttgaacaaccattttttacaacttttgtgacaattt 37297096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 38510844 - 38510795
Alignment:
Q  158 agagaaatgatatttgaa-caatcattgtttaccacttttatgataattt 206  Q
    |||||||||||||||||| |||| ||| ||||| ||||||||||||||||    
T  38510844 agagaaatgatatttgaaacaattattttttacaacttttatgataattt 38510795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 46634100 - 46634137
Alignment:
Q  159 gagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  46634100 gagaaatgatatttgaacaatcattttttacaactttt 46634137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 45082980 - 45083028
Alignment:
Q  158 agagaaatgatatttgaacaatcattgtttaccacttttatgataattt 206  Q
    ||||||||||||||||||||| |||| || || |||||| |||||||||    
T  45082980 agagaaatgatatttgaacaaccatttttgacaacttttgtgataattt 45083028  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 3838951 - 3838904
Alignment:
Q  159 gagaaatgatatttgaacaatcattgtttaccacttttatgataattt 206  Q
    ||||||||||||||||||||| ||| ||||| |||||| |||||||||    
T  3838951 gagaaatgatatttgaacaattattttttacaacttttgtgataattt 3838904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 9207589 - 9207627
Alignment:
Q  158 agagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  9207589 agagaaatgatatttgaacaatcattttttacaactttt 9207627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 18846611 - 18846644
Alignment:
Q  156 aaagagaaatgatatttgaacaatcattgtttac 189  Q
    |||||||||||||||||||||||||||| |||||    
T  18846611 aaagagaaatgatatttgaacaatcattttttac 18846644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 17388669 - 17388629
Alignment:
Q  156 aaagagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    |||||||||||||||||||||||||||| ||| | ||||||    
T  17388669 aaagagaaatgatatttgaacaatcattttttgcaactttt 17388629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 35369698 - 35369737
Alignment:
Q  157 aagagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  35369698 aagagaaatgatatttgaacaatcattttttacaactttt 35369737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 45333569 - 45333607
Alignment:
Q  158 agagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  45333569 agagaaatgatatttgaacaatcattttttacaactttt 45333607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 2571631 - 2571672
Alignment:
Q  155 caaagagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  2571631 caaagagaaatgatatttgaacaaccattttttacaactttt 2571672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 8350270 - 8350230
Alignment:
Q  156 aaagagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    ||||||||||||||||||||||| |||| ||||| ||||||    
T  8350270 aaagagaaatgatatttgaacaaccattttttacaactttt 8350230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 12657220 - 12657252
Alignment:
Q  157 aagagaaatgatatttgaacaatcattgtttac 189  Q
    ||||||||||||||||||||||||||| |||||    
T  12657220 aagagaaatgatatttgaacaatcattttttac 12657252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 32501267 - 32501230
Alignment:
Q  159 gagaaatgatatttgaacaatcattgtttaccactttt 196  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  32501267 gagaaatgatatttgaacaatcattttttacaactttt 32501230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 10692436 - 10692468
Alignment:
Q  156 aaagagaaatgatatttgaacaatcattgttta 188  Q
    |||||||||||||||||||||||||||| ||||    
T  10692436 aaagagaaatgatatttgaacaatcatttttta 10692468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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