View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10177_low_4 (Length: 388)
Name: NF10177_low_4
Description: NF10177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10177_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 141 - 377
Target Start/End: Complemental strand, 38261989 - 38261753
Alignment:
| Q |
141 |
tacgttgaatattttcgctttctaaccagcaaactcttgatgcttcccattaatgctttgtgagtttgaggagtgctaaacaataggactttcatgtctt |
240 |
Q |
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| T |
38261989 |
tacgttgaacattttcgctttctaaccagcaaactcttgatgcttcccattaatgctttgtgagtttgaggagtgctaaacaataggactttcatgtctt |
38261890 |
T |
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| Q |
241 |
tatttatttactctacttaacagtagttcccttttgctagttgtgtatatatttactttattgttttgtatttgttattctcgtcaattgcaatcttatt |
340 |
Q |
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| T |
38261889 |
tatttatttactctacttaatagtagttcccttttgctagttgtgtatatatttactttattgttttgtatttgttattctcgtcaattgcaatcttatt |
38261790 |
T |
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| Q |
341 |
gaaccctagcttcctgttggttgtccttctatcctat |
377 |
Q |
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| T |
38261789 |
gaaccctagcttcctgttggttgtccttctatcctat |
38261753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 38262252 - 38262127
Alignment:
| Q |
18 |
aaaatttatgctatttatattatgcatctagcttaattgtaagaatcaaactaatgactccatgaacccaaaaatccaattaaattggttttgttgtttt |
117 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38262252 |
aaaaattatgctatttatactatgcatctagcttaattgtaagaatcaaactaatgactccatgaacccaaaaatccaattaaattggttttgttgtttt |
38262153 |
T |
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| Q |
118 |
gtccattttcgagtctaatcaattac |
143 |
Q |
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| T |
38262152 |
gtccattttcgagtctaatcaattac |
38262127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 38240870 - 38240792
Alignment:
| Q |
272 |
ttttgctagttgtgtatatatttactttattgttttgtatttgttattctcgtcaattgcaatcttattgaaccctagc |
350 |
Q |
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| T |
38240870 |
ttttgcttattgtgtatatacttactctattgttctgtattcattattctagccaattgcggtcttattgaactctagc |
38240792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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