View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_high_12 (Length: 308)

Name: NF10178_high_12
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_high_12
NF10178_high_12
[»] chr7 (8 HSPs)
chr7 (19-294)||(44071732-44072007)
chr7 (61-292)||(47039427-47039658)
chr7 (61-291)||(47033143-47033373)
chr7 (126-294)||(47035268-47035436)
chr7 (61-240)||(37367515-37367694)
chr7 (19-66)||(47035561-47035608)
chr7 (98-214)||(2577855-2577971)
chr7 (19-66)||(47032943-47032990)
[»] chr2 (2 HSPs)
chr2 (61-214)||(34615539-34615692)
chr2 (61-214)||(34622721-34622874)
[»] chr4 (2 HSPs)
chr4 (109-214)||(420098-420203)
chr4 (19-125)||(26827864-26827970)
[»] chr8 (1 HSPs)
chr8 (42-154)||(35961669-35961781)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 44072007 - 44071732
Alignment:
Q  19 ctccggtctacctctctgccgtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44072007 ctccggtctacctctctgccgtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttcc 44071908  T
Q  119 aaggcatattcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattcatcag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44071907 aaggcatattcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattcatcag 44071808  T
Q  219 acattgcttcctaagaaggttggaaaagggaaaggggaaattggatctgcttctcaagagttttagggtttctgtg 294  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44071807 acattgcttcctaagaaagttggaaaagggaaaggggaaattggatctgcttctcaagagttttagggtttctgtg 44071732  T

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Target: chr7; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 61 - 292
Target Start/End: Original strand, 47039427 - 47039658
Alignment:
Q  61 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 160  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  47039427 aggttttggaattggctgggaacgctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcag 47039526  T
Q  161 caagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattcatcagacattgcttcctaagaaggttggaaaagggaaaggggaaatt 260  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||    
T  47039527 caagcttttgggaactgtgaccattgctaatggtggtgttttgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaatt 47039626  T
Q  261 ggatctgcttctcaagagttttagggtttctg 292  Q
    |||||||| |||||||| || |||||||||||    
T  47039627 ggatctgcgtctcaagaattctagggtttctg 47039658  T

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Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 61 - 291
Target Start/End: Original strand, 47033143 - 47033373
Alignment:
Q  61 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 160  Q
    ||||||||||||||||||| || || || ||||||||||||||||| || ||||| |||||||| |||||||||||||| || || || |||||||||||    
T  47033143 aggttttggaattggctggaaatgccgctagggacaacaagaagaaccgtattgtaccaaggcacattcagcttgctgttagaaacgatgaagaactcag 47033242  T
Q  161 caagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattcatcagacattgcttcctaagaaggttggaaaagggaaaggggaaatt 260  Q
    ||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||    
T  47033243 caagcttttaggaactgtgaccattgctaatggtggtgttctgcccaatattcatcagactttgcttcctaagaaggttggaaagggcaaaggagaaatt 47033342  T
Q  261 ggatctgcttctcaagagttttagggtttct 291  Q
    ||||||||||||||||| |||||||||||||    
T  47033343 ggatctgcttctcaagaattttagggtttct 47033373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 126 - 294
Target Start/End: Complemental strand, 47035436 - 47035268
Alignment:
Q  126 attcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattcatcagacattgc 225  Q
    ||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||    
T  47035436 attcaacttgctgttaggaacgatgaagaactaagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcctaacattcatcagactttgc 47035337  T
Q  226 ttcctaagaaggttggaaaagggaaaggggaaattggatctgcttctcaagagttttagggtttctgtg 294  Q
    | || ||||||  ||| || || ||||  ||||||||||||||||||||||| ||||||||||| ||||    
T  47035336 tgccaaagaagtctgggaagggaaaagccgaaattggatctgcttctcaagaattttagggtttatgtg 47035268  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 37367694 - 37367515
Alignment:
Q  61 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 160  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||   | ||||| ||||||||  |||| || ||||||||||| || |||||| | ||    
T  37367694 aggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattgag 37367595  T
Q  161 caagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattcatcagacattgcttcctaagaaggttg 240  Q
    |||  | ||||||  ||| || ||||||||||||||||||||||| || ||||| ||||| ||| | || ||||||||||    
T  37367594 caaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcaccagactttgttgccaaagaaggttg 37367515  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 47035608 - 47035561
Alignment:
Q  19 ctccggtctacctctctgccgtacttgagtatctcgctgctgaggttt 66  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||||    
T  47035608 ctccggtatacctctctgcggtccttgagtatctcgctgctgaggttt 47035561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 2577971 - 2577855
Alignment:
Q  98 caagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaaccattgctaatggtggt 197  Q
    |||||| | ||||||||| ||||||||||||||  | | ||||||||| || |||||| | ||||||||| | || | ||| |||||||| ||||| |||    
T  2577971 caagaaaattcgaattgtgccaaggcatattcaattggttgtgaggaacgatgaagaattgagcaagcttcttggtgatgttaccattgccaatggcggt 2577872  T
Q  198 gttttgcccaatattca 214  Q
    ||| |||  ||||||||    
T  2577871 gttatgcaaaatattca 2577855  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 47032943 - 47032990
Alignment:
Q  19 ctccggtctacctctctgccgtacttgagtatctcgctgctgaggttt 66  Q
    |||| ||||| ||||| ||||| |||||||||||||||||||||||||    
T  47032943 ctcctgtctatctctccgccgtccttgagtatctcgctgctgaggttt 47032990  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 34615539 - 34615692
Alignment:
Q  61 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 160  Q
    ||||||||||||||||||| || ||||| || |||||||||||||   ||||||| ||||| || |||||  | ||||||||||| || |||||| | ||    
T  34615539 aggttttggaattggctggaaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattgag 34615638  T
Q  161 caagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattca 214  Q
    ||||||| | || | ||| ||||||||||||||||||||| |||||||||||||    
T  34615639 caagcttcttggtgatgttaccattgctaatggtggtgttatgcccaatattca 34615692  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 34622721 - 34622874
Alignment:
Q  61 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 160  Q
    ||||||||||||||||||| || ||||| || |||||||||||||   ||||||| ||||| || |||||  | ||||||||||| || |||||| | ||    
T  34622721 aggttttggaattggctggaaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattgag 34622820  T
Q  161 caagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattca 214  Q
    ||||||| | || | ||| || |||||||||||||||||| |||| ||||||||    
T  34622821 caagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattca 34622874  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 420203 - 420098
Alignment:
Q  109 gaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcccaa 208  Q
    ||||||| ||||| || |||||  | |||||||||||||| |||||| | ||||||||| | || | ||| || |||||||||||||||||| |||||||    
T  420203 gaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattgagcaagcttcttggtgatgttactattgctaatggtggtgttatgcccaa 420104  T
Q  209 tattca 214  Q
    ||||||    
T  420103 tattca 420098  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 26827864 - 26827970
Alignment:
Q  19 ctccggtctacctctctgccgtacttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttcc 118  Q
    ||||||| |||||  |||| || ||||| || ||||||||||||||| | |||||||| || ||||||||  | || |||||||||||| ||||  ||||    
T  26827864 ctccggtttacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgctgctcgtgataacaagaagaatagaatcattcc 26827963  T
Q  119 aaggcat 125  Q
    |||||||    
T  26827964 aaggcat 26827970  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 35961669 - 35961781
Alignment:
Q  42 cttgagtatctcgctgctgaggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtga 141  Q
    ||||| ||||| |||||||| ||| | |||||||||||||| |||||  | || |||||||||||| | ||| ||||||||||| |   | | |||||||    
T  35961669 cttgaatatcttgctgctgaagttcttgaattggctggtaatgctgctcgtgataacaagaagaataggattattccaaggcatgtgttgttggctgtga 35961768  T
Q  142 ggaatgacgaaga 154  Q
    ||||||| |||||    
T  35961769 ggaatgatgaaga 35961781  T

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