View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10178_high_13 (Length: 301)

Name: NF10178_high_13
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10178_high_13
NF10178_high_13
[»] chr6 (2 HSPs)
chr6 (1-288)||(10724090-10724385)
chr6 (154-216)||(11418163-11418226)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 10724385 - 10724090
Alignment:
1 gcattttattgatgtttttaatgactgtatcatcacaaggtttgagtgaatgataac--cccgataatgttggttttgccgattttgcaacttcattatt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
10724385 gcattttattgatgtttttaatgactgtatcatcacaaggtttgagtgaatgataacaccccgataatgttggttttgccgattttgcaacttcattatt 10724286  T
99 tgcaactt------cattagttgataaaactgatggtggcaaattgtacaagaaaaaggaccaaattgtgcttatttcatttgaaagtttgaacattttc 192  Q
    |||| | |      | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10724285 tgcatcctttccatctttagttgataaaactgatggtggcaaattgtacaagaaaaaggaccaaattgtgcttatttcatttgaaagtttgaacattttc 10724186  T
193 ccaaatgtagataatctttctcaatcccttgtcaaggcaatagaagaattactatactacagaaggcacaaaatgaaagtaatacaactattttgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10724185 ccaaatgtagataatctttctcaatcccttgtcaaggcaatagaagaattactatactacagaaggcacaaaatgaaagtaatacaactattttgt 10724090  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 11418226 - 11418163
Alignment:
154 caaattgtgcttatttc-atttgaaagtttgaacattttcccaaatgtagataatctttctcaa 216  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||| ||||    
11418226 caaattgtgcttatttctatttgaaagtttgaacatttttctaaatgtaaataatctttgtcaa 11418163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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