View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_high_13 (Length: 301)
Name: NF10178_high_13
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10178_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 10724385 - 10724090
Alignment:
Q |
1 |
gcattttattgatgtttttaatgactgtatcatcacaaggtttgagtgaatgataac--cccgataatgttggttttgccgattttgcaacttcattatt |
98 |
Q |
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T |
10724385 |
gcattttattgatgtttttaatgactgtatcatcacaaggtttgagtgaatgataacaccccgataatgttggttttgccgattttgcaacttcattatt |
10724286 |
T |
 |
Q |
99 |
tgcaactt------cattagttgataaaactgatggtggcaaattgtacaagaaaaaggaccaaattgtgcttatttcatttgaaagtttgaacattttc |
192 |
Q |
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T |
10724285 |
tgcatcctttccatctttagttgataaaactgatggtggcaaattgtacaagaaaaaggaccaaattgtgcttatttcatttgaaagtttgaacattttc |
10724186 |
T |
 |
Q |
193 |
ccaaatgtagataatctttctcaatcccttgtcaaggcaatagaagaattactatactacagaaggcacaaaatgaaagtaatacaactattttgt |
288 |
Q |
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T |
10724185 |
ccaaatgtagataatctttctcaatcccttgtcaaggcaatagaagaattactatactacagaaggcacaaaatgaaagtaatacaactattttgt |
10724090 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 11418226 - 11418163
Alignment:
Q |
154 |
caaattgtgcttatttc-atttgaaagtttgaacattttcccaaatgtagataatctttctcaa |
216 |
Q |
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T |
11418226 |
caaattgtgcttatttctatttgaaagtttgaacatttttctaaatgtaaataatctttgtcaa |
11418163 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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