View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10178_high_14 (Length: 291)
Name: NF10178_high_14
Description: NF10178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10178_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 47107580 - 47107324
Alignment:
| Q |
15 |
agatatatggtactcctggtatgccatatttaaaggagtttactcataacaaaatatctgaaggtgtttaagattataaattacttaagaaacattaaat |
114 |
Q |
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| T |
47107580 |
agatatatggtactcctggtatgccatatttaaaggagtttactcataacaaaatatctgaaggtgtttacgattataaattacttaagaaacattaaat |
47107481 |
T |
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| Q |
115 |
tgatattaagcaccatcagtcattcattacttttgttactaaatgttttgaaacttctcacacttatttttcaatcaccatagaaactaaattttgaaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47107480 |
tgatattaagcaccatcagtcattcattacttttgttactaaatgttttgaaacttctcacacttatttttcaatca-catagaaactaaattttgaaat |
47107382 |
T |
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| Q |
215 |
cagtctcttttataggcaatttttaaaataatcatttgatccaaaaataaaatcacac |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47107381 |
cagtctcttttataggcaatttttaaaataatcatttgatccaaaaataaaatcacac |
47107324 |
T |
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